Lolium rigidum (rigid ryegrass): 124693548
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Entry
124693548 CDS
T09103
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124693548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124693548
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124693548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA
AAA_28
SMC_N
NACHT
AAA_15
AAA_23
AAA_18
SRP54
AAA_30
AAA_25
Rad17
AAA_5
AAA_22
Zeta_toxin
AAA_24
PduV-EutP
AAA_16
AAA_33
Arf
AAA_14
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
124693548
NCBI-ProteinID:
XP_047082980
LinkDB
All DBs
Position
2:280876247..280880855
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AA seq
290 aa
AA seq
DB search
MAGDEGWKRSGIEVSTLQFGYDGQAPLFARFNLRVAPGSRCLLVGANGSGKTTLLKILAG
KHMVGGRDVVRVLNGSAFHDTQFVCSGDLSYLGGSWSRTIGSAGDVPLQGDFSAEHMIFG
VDGVDPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVDLDVV
TRMDLLDFFKEECEQREATIVYATHIFDGLETWATDIAYIQEGELRKSAKYSDIEELKTA
KNLLSVVESWLKSETKLPKKEPPRVESQPRRSSPFDASPFRASRHMAYYR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggccggagacgaggggtggaagaggagcggcatcgaggtgagcaccctgcagttcggc
tacgacgggcaggcgccgctcttcgcgcgcttcaacctccgcgtcgcccccggctcgcgc
tgcctcctcgtcggcgccaatggatccggcaagaccactctcttgaagatccttgcaggg
aaacatatggttggaggacgggatgttgtccgtgttcttaatggttctgcttttcatgac
acacagttcgtgtgcagcggcgatctttcctacctgggtggttcttggagtcgcacaatt
ggttcagctggtgatgttccactacaaggcgatttctctgctgagcacatgatttttgga
gttgatggggttgatcctgttaggcgagagaagctgattgatctactagacattgatctg
caatggcgcatgcataaagtttcagacggacagcgccgcagggtacagatttgcatgggt
cttcttcatccatacaaggtactcttgcttgatgaaatcaccgtcgatcttgatgtcgtg
accaggatggatctccttgacttcttcaaggaagagtgtgaacagagagaagctacgatc
gtctatgccacccacatattcgacggacttgagacatgggccaccgacatcgcgtacatc
caagaaggcgaactcaggaaatctgcgaaatactctgacatcgaggagctaaagactgcc
aagaacctgctgtcggtcgtggagtcatggctcaaatctgagaccaagctcccgaagaaa
gaacctccgcgcgttgagagccagcccaggcgctcctccccgttcgatgcctcccctttc
cgagcgtcacgccacatggcctactaccggtga
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