Lolium rigidum (rigid ryegrass): 124695728
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Entry
124695728 CDS
T09103
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124695728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124695728
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124695728
Complex C
U5 SnRNP specific factors
124695728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Ras
Septin
Motif
Other DBs
NCBI-GeneID:
124695728
NCBI-ProteinID:
XP_047084504
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All DBs
Position
1:complement(289884695..289890003)
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AA seq
995 aa
AA seq
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MDDSLYDEFGNYIGPELADSDADDSDAAASPSPSQSRSPSPARSPSGSPSSRRPAALMDV
DDDDYASAAQGAIVLAEDKKYYPTAEEVYGPGVEALVMDEDEQALEKPIVAPPRDVKFEV
GTRAGAASTYASTDFVLGLASNPLLVRNVALVGHLQHGKTVFMDMLVEQTHEVDTFDSEG
ERHVRFTDTRVDEQERRVSIKAVPMSLVLEGGNGKSYLCNIMDTPGHVNFSDEMTAALRL
ADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPTDAYFKLRHT
LDTINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFTLQSFAHLYLKIHGIPFDHEK
FASRLWGDLYYDHTSRTFKKKPPAVGANRSFIEFILEPLYKIYSQVVGEQKRNVESTLAD
LGVTLSNAAYKLNVMPLLRLACRSIFGTATGFTDMLVKNIPNVKDAAARKIEHIYTGQQD
SALVDAMKKCDSQGPLMVNVTKLYPKPDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPDD
EEDMTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTATICPMHMDDDVYIFR
PLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD
SIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMLAEPLEKGLAE
DIENGLVSLDSRQKEVTDFFRQRYQWDVLAARSIWAFGPDKQGPNILLDDSLSVEVDKNL
LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYS
AFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPVYVVKAFLPVI
ESFGFETDLRYHTQGQAFCVSVFDHWAIVPGDPLDKNIALRPLEPAPIQHLAREFMVKTR
RRKGMSEDVSINKFFDEAMMNELAQQAADLHLQMM
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcctctacgacgagttcggcaactacatcggcccggagctggccgactcc
gacgccgacgactcggacgccgccgcctccccatcgccctcgcagtcccgctccccctcc
ccggcgcgctccccatccggatcccccagctcccgccgccccgccgccctcatggacgtc
gacgacgacgactacgcctccgccgcccagggcgccatcgtcctggccgaggacaagaag
tactaccccacggcggaggaggtgtacggccccggcgtcgaggcgctggtcatggacgag
gacgagcaggcgctcgagaagcccatcgtggcgccgccgcgcgacgtcaagttcgaggtg
ggcacccgcgcgggcgccgcctccacctacgcctccaccgacttcgtgctcggcctcgcc
tccaacccgctgctcgtccgcaacgtggcgctcgtgggccacctgcagcacggcaagacg
gtcttcatggacatgctcgtggagcagacccacgaggtggacaccttcgactccgagggc
gagcgccacgtcaggttcaccgacacccgggtcgacgagcaggagcgcagggtctccatc
aaggccgtgcccatgtcgctcgtgctcgaggggggaaacggcaagtcgtatctctgcaat
atcatggacacgcccgggcatgtcaatttctccgatgagatgactgctgccctccggctg
gccgatggggctgtgcttgttgtggatgctgctgaaggcgtcatggtaaacaccgagagg
gcgattcgtcatgcaatccaagaaaggcttcccatcgttgttgtgattaacaaggttgat
agactaataacagagctaaagctgccaccaactgatgcatatttcaagctacggcataca
ctggacacaatcaacgatctaatctcatcttgttctaccacagtaggtggcactcaactg
gtagatcctgctgctggaaatgtttgttttgcgagtggttctgctggctggtcttttacc
ttgcaatcctttgctcatctttatttaaagattcatgggataccatttgaccatgagaaa
tttgcatctcgtctatggggtgatttgtattatgaccatacctctagaaccttcaaaaag
aagccaccagcagtaggagctaacagatcattcattgagttcatccttgagcctctgtac
aaaatctatagtcaggttgtcggagagcagaagagaaatgttgaatcaactcttgctgat
ttgggtgtgacactgagcaatgcagcttataaacttaatgttatgcctttgctaagactt
gcttgccgctcaatttttggcactgctactggctttacggacatgttagtgaaaaatatt
cctaacgtgaaagatgctgcagcaaggaagatagaacacatatacactggtcaacaagat
tcagcacttgtggatgcaatgaagaaatgtgattctcaaggcccccttatggtcaatgtt
acgaaactgtatcctaagcctgactgtagtgtctttgatgcctttggacgagtttatagt
ggcacaatacagactggtcagactgtccgggtccttggagaaggctattctcctgatgat
gaggaggacatgactgtcaaagaggtcaccaagttgtgggtctatcaggcacggtaccgt
gttccaataagtaaagcccctgctggttcttgggttcttattgaaggtgtggatgcatca
atcatgaaaactgcaaccatatgtcctatgcacatggatgatgatgtgtacatatttaga
cctctacgcttcaataccttgcctgttgtaaaaatagcagctgagcctcttaacccaagt
gagctacctaaaatggtggaaggtctccgtaaaatcagcaagagctatcctcttgcaatt
actaaggtagaagagtcaggagaacacactatccttggaactggcgagctatatctggat
tctataatgaaggacctcagagagctctactctgaagtagaagtgaaggttgcagatcca
gttgtgacgttttgtgaaacagttgttgatacttcctccatgaaatgttttgctgaaaca
cccaacaagaggaacaaaattaccatgttagctgaaccattagagaagggcttggcagaa
gatattgagaatggccttgttagtcttgattccagacagaaagaagtcaccgacttcttt
cgccaacgctaccagtgggatgtgcttgcagcaaggtcaatatgggcttttggacctgat
aagcagggtcctaacattctactggatgactctctttcggtagaggtggataagaacttg
ctaaatgcagtcaaagattcaattgtccaagggtttcagtggggtgctagagaaggtccc
ttgtgtgacgaaccaattaggaatgtgaagttcaagatcttaaatgcaaacatcgctcca
gaaccattgcatcgtggtggtggtcaaataatccccacagcccgtcgggtggtctactca
gcctttttgatggctaatcctcgtctcatggagcctgtttattatattgagatccaaact
ccaattgactgtgtctctgctatatatacggtcctgtctcggcgacgtggtcatgtgaca
gccgatgtacccaagccaggcactccagtatatgttgtgaaggcatttttacctgtcata
gagtcttttggctttgagacagatctcagataccatacacagggacaagccttttgtgtg
tcagtgtttgatcactgggctattgttcctggcgaccctcttgacaagaacattgccctc
cggcctctggaaccggcacctatacagcacctagcccgtgagttcatggtaaagaccagg
cgaaggaagggcatgagcgaggatgttagcatcaacaagttctttgacgaggctatgatg
aatgagctggcgcagcaggctgcagatcttcacttgcagatgatgtag
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