Lolium rigidum (rigid ryegrass): 124704542
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Entry
124704542 CDS
T09103
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
124704542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124704542
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
124704542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
124704542
NCBI-ProteinID:
XP_047092768
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All DBs
Position
3:393973641..393983752
Genome browser
AA seq
1010 aa
AA seq
DB search
MGVPAFYRWLADRYPQTVSDAEEEEPVELEPGAFVPVDLRRPNPNGIEFDNLYLDMNGII
HPCFHPEGRPAPTTYDQVFKSIFDYIDHIFCLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEETMRMQFEAEGRTLVQKEKSEAIDSNVITPGTPFMFVLSTALQYYIQ
LRLNHSPGWQSVKVLLSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHVLYGLDADLIML
SLATHEVHFSILREVITMPGQHDKCFLCGQAGHLAAECRGPGPSDNVVELPPIHKKKYQF
LNIWVLREYLEKDLEIADPPFKINFERIIDDFVFICFFVGNDFLPHMPTLEIREGAINLL
MSIYRAEFKAMGGYLTDGGEVLLERVEHFIQAVAVNEDQIFRKRTRIQKAYENNEDRRRA
QGEISEDNKYVDMVKLGEPGFKERYYAEKFKEEAESKPIDQVQRDVVQKYVEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKGLTEFEITFFLGQPFKPFDQLMGTLPAASSNALPKH
YGDLMTDPNSPLKYFYPKDFEIDMNGKRFAWQGIAKLPFIDETRLLAETHKLEESLTEEE
RFRNTTMFDIIYVRETHPLAAQIAFLYQMYSQHSITDPSYVIPIDPAASGGMNGFLCLSQ
RNWYSISVGSPVKGFNAITQNRVLNGTYINPQYHKHIAEPPEGVIIPPKILKPYDFKPFP
VLWHEDNSRRQTRDRPQVHGALTGSVLGEAAHRLLKNSLQMKSGSSAGLLEMPYRGAPYG
PRNGPRPFGPSGYERGFVDNPYHAHMSRSAPNPRPQFFGEAQGNRQNVRLLERPNTRIQD
GGINAGMSNLTIQDGPRMHQNNRMQNPGYIPNQPYPNQYAGFPPQRPMQNTNFARPARNA
GFPQQRPVQNAGFPQPRPVQNAGFAQQRPVQNAGFIHQQPVNGVPPPLPPSTWIGKQTSG
GGQKGMPAKQDPRTNRQPKQDNPRSQQESRQQAAKPVYRVKSQAPNGLPE
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttctacaggtggctggcggaccgctacccacagacggtgtcggac
gcggaggaggaggagcccgtggagctcgagccgggggccttcgtccccgtcgacctccgc
cgccccaaccccaacggcatcgagttcgacaacctctacctcgacatgaacggcatcatc
cacccctgcttccaccccgagggccgccccgccccgaccacctacgaccaggtgttcaag
tcgatttttgattacatcgaccacatcttctgcctcgtccgccccaggaagctcctctac
ctggccatcgatggcgttgccccaagggcgaagatgaaccagcagcgctccaggcggttc
cgggctgccaaggatgctgccgacgcggcggccgaggaggagacgatgaggatgcagttc
gaggcggaggggaggactctggtccagaaggagaagtcggaggcgatcgactccaacgtc
attactcctgggacgcccttcatgttcgtgctctccaccgcgctgcagtactacatacag
ctgagattgaaccactcccccgggtggcagtcggtcaaggtattgttgtccgactcgaat
gttcccggagagggggagcacaagatcatgtcgtacatccgcctgcagcgcaaccttcca
gggtttgacccgaatacgcgccacgtcctatatggccttgatgctgatttgatcatgctt
tccctggcaactcatgaggtccacttctcgattttaagagaggtgatcaccatgccaggg
caacatgataaatgctttctgtgtggtcaagctgggcatttggctgccgaatgcagaggc
cctggtccgtctgataatgtcgtggagctccctccaattcataagaagaagtaccagttt
cttaacatctgggtgctgcgggaatacctggagaaggatttggaaattgcagaccctccc
ttcaagataaactttgaacgcatcattgatgattttgtgttcatctgtttctttgttggg
aatgacttcttgcctcacatgccgactctggaaattcgtgagggtgcaattaatcttctg
atgagtatttatagagcggagttcaaagcaatgggcggttacctcactgatgggggcgag
gttttattggaacgagtggagcatttcattcaggctgttgctgtcaacgaagatcaaatt
ttccggaagcgtacacgtattcagaaggcgtacgagaacaatgaggatagacgtagagcg
cagggagagatctctgaggataataaatatgtggacatggtaaaactaggagagccagga
ttcaaggaaaggtactatgccgagaagtttaaagaagaggcagaatcaaaacctattgat
caagtccagagagatgttgttcagaaatatgtggaaggtctttgctgggttatgagatac
tactatcagggtgtttgttcatggcagtggttctatccataccattatgcgccttttgca
tctgacctgaaaggcttgactgagtttgagataacctttttcctgggtcaacctttcaag
ccgtttgatcaactaatgggaacactgccagctgctagctcgaatgcattgccaaaacac
tacggggatttgatgactgatccaaattcacccttgaagtatttctaccccaaagatttt
gagatagacatgaacgggaaacgttttgcgtggcagggtattgcaaaattgccttttatt
gatgaaacaaggctgcttgcggagacacataaacttgaagagtcattaacagaagaagag
agattcaggaatacaacaatgtttgacataatttatgtgcgggaaactcatccattggct
gctcagattgccttcctgtatcagatgtactctcagcattcaataacagatccttcctat
gtcatacctattgaccctgctgctagtggtggaatgaatggatttctttgtttatctcaa
agaaattggtacagcatctctgtaggatctccagttaaggggttcaatgccatcacccag
aacagagttttgaatggtacttatattaatcctcagtatcacaaacacatcgcggagcct
ccagagggtgtcattatacctccaaagatattgaaaccatatgatttcaaacctttcccc
gtgctgtggcatgaagataatagtcgccgacaaacaagagacaggcctcaggtgcatgga
gctctgacaggttctgtcttaggagaggctgcacatcgtctattgaaaaattcccttcag
atgaaatctggcagctctgctgggctgcttgagatgccatataggggtgcaccatatggc
cctagaaatggaccaaggccctttggaccttcgggatatgagaggggttttgtggataat
ccataccacgcacacatgtccagaagcgctccaaatccccggcctcagttctttggtgaa
gctcaaggcaacagacagaatgtgcggttactagagcggccaaacactcgaattcaggat
ggtggcatcaatgcagggatgtcaaacctgacaatccaagacgggccaaggatgcatcaa
aataacaggatgcagaatccaggatatattccaaatcagccatatccgaaccagtacgct
gggttcccacctcagaggcctatgcagaacaccaattttgcacgacctgcccgaaatgcg
ggattcccacagcagcgacctgttcagaatgcaggattcccgcagccgcgacctgttcaa
aatgcaggattcgcacagcagcggcctgtccagaatgcaggattcatacaccagcaacct
gtaaacggggttcctccaccattacctcccagtacttggattggcaagcaaacaagcgga
ggaggccagaagggtatgcctgccaagcaggatccaaggacgaatagacagcctaagcag
gataacccaagatcacaacaggagagcagacagcaggctgctaagccagtgtaccgtgtc
aaaagccaagctcctaatggcttgccagagtga
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