Lethenteron reissneri (Far Eastern brook lamprey): 133340886
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Entry
133340886 CDS
T09663
Symbol
SMCHD1
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lrj03036
]
133340886 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
lrj03400
]
133340886 (SMCHD1)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
133340886 (SMCHD1)
DNA repair and recombination proteins [BR:
lrj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
133340886 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
HATPase_c
SMC_hinge
Motif
Other DBs
NCBI-GeneID:
133340886
NCBI-ProteinID:
XP_061405338
LinkDB
All DBs
Position
10:complement(6934937..7031028)
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AA seq
2058 aa
AA seq
DB search
MAGVARGVCDASSSSASAAALRSASPKARGEMWANWSHVFVFDRRGTSEGDGSEKVLDVT
GVKLFREFRSLVAQLFHIGSEDSFVITTTSRKEIKDDKSFEQGVLGCHGDLTLYVLSSVE
QELPAQACERIDFLPHYDTLVKSGMYEYYASEGQNPLPYAFAELIDNALAATAGNSAREI
VVRLLFDETQGRPAVVVTDNGCGMTPRQLNNWAVYRLSKFTRHDPDASDGGSGYKPPLEV
MRSINSDISCFGVGGKQAVFYIGHCTRMISKAASSTDVHELCLSKEDFERKERSNEAIYS
SYIRNRMPGDSSHVSADDDHFLRSLIAEEKGKPSFTNVVVTGIALPHIHYLKASFHTWTR
QLAHIYHYYIHGSRGNELPTAKLAAKRHVASNINIEIALYERQRAPKVVNLREVTDDMQT
QYVRTACDTFEFRARESGNLGSSIEGVIRYHPFLYDHETYPKDVALPRNEPLMDEEDYDV
FMLNPTPQSKRPMFECYWNGRLIPYTTIQDFEWCERPKKYGSVPPECYNRISGCLFSNDR
LQVSTNKLTFMDLAIRLKSKDTIFTRLVNGQEQRARIEREFLQWLRDCHERYDKQVKFSG
FCSTLTRSDVPKRMQTPWAVFSRIEWDGRLFNTGDLVKTIKTQPIYYGKIQRFLLYGDHE
KDVYATGGEMEISQEPRELYSELRVVPLSKLDRTASISQIKKCIDDEMAKFPDKFLVTWP
EGGEVTESDKRPAGTPIGPLRVEILNRRGDPMQKLPGGGQTSTRKLLVELKILFHSTSGD
KEIVSHISQHGGSKWPFWFKKMENLNKRGKYTLRLQVLNESNGNMFSGHQLPSEAIHFTV
TEAKPDKFTVGFLESPFLIGTPFNIPLDMKDEFGHDSCPPMGLKPILEAAGLELSYDSTV
IRGTTLLLKGVTAKGTVHHCQGKNFNLKVTVPNLKESTQMLKIRLLPGPPSMLRVKPEAE
LLLVENGTALHFTVDIMDKAGNVSSLPKLIIQCKFEGAPGLPVYMADCSNASSATLTGPP
IHIASLKEDKIITAFISIQNNKEVPPVERKVKLQPSSRAASIQIFNLGNNRATLIRPADE
INWPAGEHLRNLLYKLYDEGDREIMVNATLVSKMRVTWTPKVNRELLMQGLLPDVKVPTL
ASEPKYCQIFFQDDNNTLETSFTIRAIPDEPKNLRVTLKGLPIIQLDEMLSAEILVEVTD
QFGNTVMSSGFATALNVSAKGLDLSTLNMSWQECSGSVLVKGIRFQLGPLGPREILFSLK
DLKEHLIVTLDAGQPATLQLLPWHDTQKPITVYNCSSLEKPLTVQLCDKWGNPCQQPNVR
VQLITPHSLKLSPAATTQKTNKQGKAEFGVLQVNAPCGDFTLQLKAHVGKQVLEGPKILL
SVLPDPNKAAQLLVDFNKLVQHTVGGILTDLMVQVLAEDGKLMKNVTPNNLSMKIWNADT
KVSPKSPSKSITFQCNMPQAGDKEGHFYFRNKVLPEVTGMYNIEFIYTHEKTMLKGMLVT
LEVKPGPPERLQPDVTPATLTVSNSRSLDSRTLLRAVTLRLTDQFGNPTGCDLDGEVEVT
IEGSEEVKTEGEERPLFIGHKPSVQVPLTAGVAKIQSLVLAEDTPGHDSAKYVLCFEVRG
EALPEEPPVQPYRLPFMFYNDGKKQQEMAALSKQRDQLSSIVGKMRSMLEIKEKLVKELK
VGQREAATKEQKLRADLRKQKVPDMQLNTVEVVDELIGSLKERHELLVQQPRRTCTLPPY
PRVDQEILGKLGHLALIEDEEVARVLSWHMSGDMDCLLTLTTEAAQRIYVETNGQQQLLP
LSSIFRRNLSAWNKPLPHMINGRPWFNVEGNPVYARHLLIFPKHQQQCQIVFSQLLGDAI
ILDSLDTANRYRQEVVKSMFCPTLLTRNGERIRSNGKFGGQQNHAPLLAKLRGAVFGAPL
PAECQELSSQIGYLQELRSAIEQHNDVQRELRSHVDEMRSPQMKQQQAELRDSEQKLRSL
EYKIGMTPQRPGLKAGMPVTLDHRGSYISTGGNGLDLATPSTPLTHRRGRREPARRSGSD
NGTSSSPDTPIRSKRRKL
NT seq
6177 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgttgcgcgtggagtttgcgacgcgtcctcctcgtccgcctcggccgccgcg
ctcaggtcggcgagcccgaaggcccgcggcgagatgtgggccaactggagccacgtgttc
gtgttcgaccgccgcgggacgagcgaaggtgacggcagcgagaaagtcctggacgtgacc
ggagtaaagctcttcagggagttcaggagtctcgtggcgcagctcttccacatcgggagt
gaagacagctttgtcatcacaaccacgagcaggaaagagatcaaggatgacaagtccttt
gagcagggcgtgctgggctgccacggtgacctcacgctctacgtgctctcatccgtggag
caggagctccctgcacaggcgtgcgagcgaatcgactttctaccgcactacgacactctg
gtgaagagcggcatgtacgagtactacgccagcgaggggcagaacccactgccgtacgcc
ttcgctgagctcatagacaatgcgttggcggcgacggcaggaaattcagcaagggagata
gtcgtccgtctgctgtttgacgagacgcagggccggccggccgtggtggtaacagacaac
ggttgcggcatgacgccccggcagctcaacaactgggccgtctaccggctctccaagttc
acgcggcacgaccccgacgccagcgatggtggctcgggctacaagcccccgttggaggtg
atgcgcagcatcaacagcgacatctcctgcttcggcgtcggaggcaaacaagccgtcttt
tacatcggacactgcacacggatgatcagcaaggcagccagctccacggacgtgcatgag
ctgtgcctctccaaggaggactttgagaggaaagagcgcagcaatgaggccatctacagc
agctacatccgcaaccgcatgccgggcgactcatcccacgtgagcgccgacgatgaccac
tttctgcggagcctgatcgcagaggagaagggcaagcccagctttaccaacgtggtggtg
acgggcatcgcactgccgcacatccactacctcaaggcgtccttccacacgtggacgcgc
cagctcgcacacatctaccactactacatccatggttcccgtggcaatgagcttcccact
gccaagttggctgccaagcgccacgtggcctccaacatcaacatcgagattgctctgtac
gagcggcagcgcgcgccaaaggtggtgaacctgcgcgaggtgacggacgacatgcagacg
cagtatgtccgcacggcgtgcgataccttcgagttccgcgcgcgcgagtccggtaacttg
ggatcctccatcgagggtgtgatccgctaccacccgttcctgtacgaccacgagacgtac
cccaaggacgtcgccttaccccgcaacgagccactcatggacgaggaggattacgatgta
ttcatgctgaacccaactccacagagcaagcgtcccatgtttgagtgctactggaacggg
cggctcatcccctacaccacaatccaggactttgaatggtgcgagcggccgaaaaagtat
ggctccgttccccccgagtgctacaaccgcatctcgggctgcctcttctccaacgatcgg
ctgcaagtgagcaccaacaagctgaccttcatggacttggcaatccgactcaagagcaag
gacaccatcttcacacgcctcgtgaatggacaggagcagcgagctcgcattgagcgcgag
ttcctgcagtggctcagggattgccatgagcgctacgacaagcaggtgaagttttcgggc
ttctgcagcacattgacacgctccgacgtgcccaagcgcatgcagacgccctgggccgtg
ttctcgcgcattgagtgggatggacgcctcttcaacaccggcgacctggtgaagactatt
aaaacacagcccatttactacggtaaaatccagcgcttcctactgtatggcgatcacgag
aaggacgtgtacgccacgggcggggagatggagatctcgcaggagccgcgcgagttgtac
agtgagctgcgggtcgtgccgctgtctaagctcgaccgtacagcgtcgatctcgcagatc
aagaagtgcatcgatgacgaaatggcaaagtttccagacaagttcctggtgacctggccc
gagggaggagaagtgaccgagagtgataagagaccggccggcacccccataggccccctg
cgcgtggaaattctaaacaggcgcggtgacccgatgcagaagctgcccggtggaggccag
acctccactcgcaagttgctggtggaactcaagatcctgttccactctacgagcggagac
aaggaaattgtgtcccacatcagccagcacggaggcagcaagtggcctttctggtttaag
aaaatggagaaccttaacaagcggggcaaatacacactgcggctgcaggtgctgaacgag
agcaacgggaacatgttttccgggcaccaactgccctcggaagccatacacttcaccgtc
accgaggccaagccagacaagttcaccgtgggcttcctggagtcaccctttctcattggc
accccgttcaacattccgctcgacatgaaggacgagtttggccacgacagttgccctcca
atgggactcaagcccatcctggaggcagcgggccttgagctgtcttatgatagcaccgtc
atcaggggcaccaccctcctgctcaagggcgtcaccgccaagggcacggtgcaccactgc
cagggcaagaatttcaacctcaaggtgacggtgcccaacctgaaggagagcacgcagatg
ctcaagatccgcctgctgccaggcccgcccagcatgctgagggtgaagcccgaagcggag
ctgctgctggttgagaacggtaccgcgttgcacttcacggtggatatcatggacaaagcg
gggaacgtctcgtctctgcctaagttgatcatccagtgtaagtttgagggcgcccccggt
cttcccgtgtacatggcggactgcagcaacgccagctcggccactctcacggggcctccc
atccacatcgcctctctcaaggaggataaaatcatcacggccttcattagcatacagaac
aacaaagaagttccgccggtggagcgcaaagtgaagctgcagcccagcagccgcgccgcc
tccatccagatcttcaacctcggcaacaaccgcgccacgctcatccgtccagccgacgag
atcaactggcctgcgggcgaacacctgcgcaatctcctctacaagctgtacgacgaggga
gaccgcgagatcatggtcaacgccacgcttgtctccaagatgcgggtgacgtggaccccc
aaggtgaaccgggagttactcatgcagggccttctgccggacgtaaaggttcccacgctc
gccagcgagcccaagtactgccagatcttcttccaggacgacaacaacactctggagacc
tccttcaccatcagagccatcccggatgagcccaagaacctgagggtgacgctgaaaggc
ttacccatcatacaactggacgagatgctgagcgctgagatcctggttgaagtgacggat
cagttcggaaacaccgtgatgtcgtccggcttcgcgacggcgctcaatgtctcggccaaa
ggtctcgacctttcgacgctcaacatgagctggcaggagtgctccggcagcgtgctggtg
aagggcattcgcttccagttaggccccctgggccccagggaaattttattctcgctcaag
gaccttaaagaacacctcatagtcaccctcgacgcgggccagcccgccacgctgcagctg
ctgccctggcacgacacgcaaaagcccatcactgtgtacaactgcagtagcctggagaag
cccttgacggttcagctgtgcgacaagtggggaaacccttgccagcagccgaacgtccgt
gtgcagctcatcaccccgcactcgctcaagctctctccggctgccaccactcaaaagacg
aacaagcaggggaaggccgagtttggggtcctccaagtgaacgcgccctgcggagacttc
acgctgcagctgaaggcccacgtggggaaacaggtgctggaggggcccaagatcctcctg
tcggtgctgcccgatcccaacaaagccgcgcagctcctggtggacttcaacaagctggtg
cagcacactgtgggaggcatcctcacagacctcatggtgcaagttctggctgaggatggg
aagctgatgaagaacgtgacacccaacaacctgagcatgaagatctggaatgcagacacc
aaagtctcccccaagtctccctctaagagcatcacattccagtgcaacatgccccaagcg
ggagacaaggaaggacatttctacttccggaataaagttctgccggaggtcactgggatg
tacaacattgagttcatatacacccacgagaagacaatgctgaagggaatgctggtcacg
ctggaggtgaagccggggccgcccgagcgactgcagccggacgtgacaccggccacgctc
accgtgtccaactcgcgctcgctcgacagccgcacgcttctgcgcgccgtcacgctgcgg
ctcacggatcagtttgggaacccgaccggttgcgacttggacggagaggtggaggtgacc
atcgaggggagtgaggaggtgaagacagagggggaagagaggccgctcttcattggacat
aaaccctcggtccaagtcccactcaccgccggcgtcgccaaaattcagagcctggtgctg
gcagaggacacaccgggccacgacagcgcaaagtacgtgctgtgcttcgaggtgcgcggc
gaggccctgccggaagagccgcccgtgcagccctacagactccccttcatgttctacaac
gatggcaagaagcagcaggaaatggcggcgctgtcgaagcaacgggatcagctgtcgagc
attgtggggaaaatgcggagcatgctggaaattaaggagaagctcgtgaaggagctcaaa
gtggggcagagagaagccgccaccaaggagcagaagctgcgcgcggatctccgcaagcag
aaagtccccgacatgcagctcaacacggtggaggtggtagatgagctgatcggatcgctg
aaggagcgacacgagcttctcgtgcagcagccacgccgcacgtgcaccctgccgccatac
ccgcgcgtcgaccaggaaatcctgggcaagctgggccacttggcactgatcgaggacgag
gaggtggcgagggttttgtcgtggcacatgagcggcgacatggactgcctgctcaccctc
acgacggaggccgcccagcggatctacgtcgagaccaacgggcagcaacagctgctgccc
ctgagctccatcttcaggagaaacctgtctgcctggaacaagccgctaccacacatgatc
aatggccgtccgtggttcaatgtggaggggaatcctgtgtacgcgcgccacctgctcatc
ttcccaaagcaccagcagcaatgccagatcgtgttctcacagctgctgggggatgccatc
atcctggactctctggacacggccaaccgctacaggcaggaggtcgtcaagtcgatgttc
tgcccgacgctgctgacgcgcaatggggagcgaatccgcagcaacggcaagtttggcggt
cagcagaaccacgcgcctttgctcgccaagctccgcggtgctgtcttcggagcgcccctc
cccgccgagtgccaggagctcagcagccagatcggctacctgcaggagctacgctcggcc
atcgagcagcataacgatgtgcagcgagagctgcgctcgcatgtggacgagatgcggtcg
ccgcagatgaagcagcagcaggcggagctgcgtgactcggagcagaaactccgctcgctc
gagtataaaattgggatgaccccacaacggcctggactaaaagccggcatgcccgtgacc
cttgaccaccggggctcatacatatccactggtggtaatggcttggacttggcgactccc
tcgacccctctgacccacagacgtggccgacgggaacccgcccggcgcagtgggagtgac
aatggaacaagcagcagccccgatacccccatcaggagcaagcgccgcaagctgtga
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integrated database retrieval system
