Lethenteron reissneri (Far Eastern brook lamprey): 133348819
Help
Entry
133348819 CDS
T09663
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
133348819 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lrj03000
]
133348819 (KDM2B)
04121 Ubiquitin system [BR:
lrj04121
]
133348819 (KDM2B)
03036 Chromosome and associated proteins [BR:
lrj03036
]
133348819 (KDM2B)
Enzymes [BR:
lrj01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
133348819 (KDM2B)
Transcription factors [BR:
lrj03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
133348819 (KDM2B)
Ubiquitin system [BR:
lrj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133348819 (KDM2B)
Chromosome and associated proteins [BR:
lrj03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
133348819 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
133348819 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
C1_1
Nucleo_P87
Motif
Other DBs
NCBI-GeneID:
133348819
NCBI-ProteinID:
XP_061417828
LinkDB
All DBs
Position
28:complement(4195415..4283882)
Genome browser
AA seq
1270 aa
AA seq
DB search
MAAAAAADVESNWTHAALWPWHGGQPLDPRGKMVDNSTLKSRLDPEADGLPRVRARKGRR
HGDGESDSVHSDSSDSSSSTSSAASSTAASSAASSTSASSAVTAAAAAAAAAASTSSSVC
SPSPPSSAASADSGGSGGGGGGGGGGGGGGGGGGKIRRDAPCRKGSPGAACAKRFKRAGS
SDSERSDEGCPRTPTGSPDGAQQPPLAPVGAEPSPVARRGAPAATVVTGGGVALLNQSQP
PTKAVAKPKAPDKPAEWQPGNRKQQQQQQLAPASGASEDTAVTAPAPDDGKYRVGNKPGK
ARSGQASAAASGGGAGSSGGGGGSGGGSGGGGVSPGPGSASSSSAGPAQGQGSGLRSAIS
SGARRRRTRCRKCEACVRTECGECTFCKDMKKFGGPGKMKQSCIMRQCIAPILPHTAVCR
ICGEAGKEDAAEGEEEKFSMTLMECSICNEIVHPACLKIDDKEGVINDELPNCWECPKCN
QEGKTGKQKRGPGFKYASNLPGSMLRECGERRRSEQDDAFPRRRSDEALKREHARSDDDD
SDADSRFGSVGEDDDDDDDGGADEEEEEEDEGRRRDRDEDEEAAAALEVSEAVAESVAAA
GAVTPTVPAASDAAMLSDHSPASPPSPAGSASSPPPPEPPPPLPTAAVVAASAAVQHTPA
NANRKGTEDGVVVSKKRKEVDGVQQPLGQKKKVKVEKAEKLLRKKKQKAVEVNNGRVDSG
HRREGPAAWLERRGVASEQGRAWRGTDKQSSAAPDAPAAAAAAAAAGPSGRENERKPNKH
SRDAATAVITGGGSGGGGGGGGVTAGEHRSKTRDANDRVRPAKLHATSKASSWGLHKPEQ
NSVGNSSAGRNNANNNSSNGNSGDGGGANSTNKNHRAPLVKSEEDGENGNNRTPRLFSSS
ERLQKAAKSLNGIPRGGPAARQPQQQQLQQLQQQQQAAGLAQAPRLCGVNARLGGLPRPP
SSVSPPKPHLLERHVIKPPLVSPPPDALPLGDGGSHPLRREAWLGVFRFLSHRDLCVCMR
VCKTWNRWCCDRRLWAKIDLSRCKSVTPLMLSGIIKRQPSALDLSWSNVSKKQLAWLVNR
LPGLKELVLSGCPWASVSALCGASWPPLRALDLRWAEGVKDAHIRDLLSPDSDYTPGAED
RLRGVSELRLAGLDITDASVALLVRLAAGLSTLDLAHCAHLTDQAVNVLTAPGAPTRDTL
RHLVLAGCARITDACLPLLVRCPHLSRADLRSCKLVTPEACQRLVTELCPQGTFALPEDR
LILRVTSTGS
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcagcagctgcagatgtggaatcaaactggacccatgctgctctgtggcca
tggcacggaggacaacccctggatcctcgtggtaaaatggtggacaactccacgctgaag
tcacggcttgacccggaagcagacggcctgccgagggtccgggcccgcaagggccgtcgt
cacggcgacggggagagcgacagcgtccactcggactcctccgactcctccagctccacc
tcgtcggccgcgtcgtccaccgcggcctcctccgccgcgtcgtccacctcggcctcgtcc
gccgtgaccgcggccgcagcggcggccgcggccgcggcgtccacctcctcgtcggtctgc
tcgccctcgccgccctccagcgccgcttctgccgattccggcggaagcggcggaggcggc
ggtggcggcggcggcggcggtggcggtggaggcggcggcgggaagatccggcgcgacgca
ccctgccggaagggctcgcccggcgccgcctgcgccaagcggttcaagcgcgcggggtcg
agcgactcggagcgcagcgatgagggctgcccccgcacgcccacggggtcgcccgacggt
gcccagcagccgccgctggcgcccgtcggagcggagccgtcgcccgtcgctcgacgtggc
gctccggccgccaccgtcgtcaccggtggcggcgtggcgctgctcaaccagagtcagccg
ccgacgaaggccgtcgccaaacccaaggcaccggacaaaccggcggagtggcagcccggg
aaccgtaagcagcagcagcagcagcagctggcgccggcaagcggagcctcggaggacacc
gcggtcacggcaccggctcccgacgacgggaagtaccgtgttgggaacaagcctgggaag
gcgcgctctggtcaggcctcggcagctgctagcggcggcggcgccggtagcagcggcgga
ggaggcggtagcggcggcggtagtggcggtggcggcgtgagccccggtcccggctctgcc
tcgtcgtcgtcagccggcccggcgcagggccagggctcgggcctccgctcggccatctcg
agcggcgcgcggcgacggcgcacgcgctgtcgcaagtgcgaggcgtgcgtgcgcaccgag
tgcggcgagtgcaccttctgcaaggacatgaagaagttcggaggccccggcaagatgaag
cagtcgtgcatcatgaggcagtgcatcgcccctatcctcccgcacacggccgtgtgccgc
atctgtggcgaggccggcaaggaggatgcggcggagggggaggaagagaagttcagcatg
acgctcatggaatgctccatctgcaacgagatcgtccaccctgcctgcctcaagatcgac
gataaggagggagtgatcaacgacgagctgcctaactgctgggagtgcccaaagtgcaac
caggagggcaagactggaaagcagaagcgcgggcccggcttcaagtacgcctccaacctg
ccgggctcgatgctgcgcgagtgtggcgagcggcgacgctccgagcaggacgacgccttc
ccgcgccggcgctcggacgaggcgctcaagcgcgagcacgctcgctcggacgatgacgac
tcggacgcagactcgcgcttcggcagcgtcggcgaggacgacgacgacgacgacgacggc
ggcgccgacgaggaggaagaggaggaggacgaggggcgccggcgcgacagggacgaggac
gaggaggcggcggcggcgctggaagtctccgaggcggtggccgagtctgtggcggccgcg
ggggcggtgacgccgaccgtcccggccgcgagcgatgccgcgatgctgtcggaccactct
ccagcgtcgccgccgtcgccggccgggtccgcgtcgtcaccgccgccgccggagccgccg
ccgcctctgccgaccgccgccgtcgtcgccgcctctgctgctgtccagcacacgccggcc
aacgccaaccgcaagggcacggaggacggagtcgtcgtctccaagaagaggaaggaggtg
gacggggtgcagcagccactcgggcagaagaagaaggtcaaagtagagaaggctgaaaag
cttctgagaaaaaagaagcagaaggccgtggaggtgaacaatggccgcgtggactcaggc
caccggagggagggcccggcggcctggctcgagaggagaggcgtggcctcggagcagggc
cgcgcgtggagggggaccgacaagcagtcgtccgccgcgcctgacgcgcccgccgccgcc
gctgctgccgcggccgccgggcccagcggtcgcgaaaacgagcggaaacccaacaaacac
tcgcgcgacgctgccacggccgtcatcaccggtggtggtagtggcggcggtggtggtggc
ggcggtgtcaccgctggggagcaccgttccaaaacgagagacgctaacgaccgcgtgagg
cccgccaaactgcacgcgacgagcaaagcttcctcctggggcctccacaaacccgaacag
aactctgtcggcaatagcagcgcgggtcgcaataacgccaacaacaacagcagcaacggc
aacagcggcgacggcggcggcgccaacagcacgaacaaaaaccaccgcgcgccgctggtg
aagtcggaggaggatggcgagaatggcaataaccggacgccacgtttgttctcgagtagc
gagcggctgcagaaggcggccaagagcctcaacgggattccccgcggcggccctgccgcc
aggcagccgcagcagcagcagctgcagcagttgcagcagcagcagcaggccgcggggttg
gcgcaggcgccgcggctgtgcggagtgaacgcgcggctcggtggcctcccgcggccgcct
tcctccgtgtcgccgcccaagccgcacctactggagaggcacgtgatcaagccgccgctc
gtgagcccgccgcctgacgccctgccgctgggcgacggcggctcgcacccgctgcggcgc
gaggcctggctcggcgtcttccgcttcctgtcgcaccgtgacctctgcgtgtgcatgcgc
gtctgcaagacgtggaaccgatggtgctgcgatcggaggctgtgggccaagatcgacctg
agccggtgcaagtctgtgactccgctcatgctgagcggcatcatcaagcgccagcccagc
gctcttgacctcagctggtccaacgtctccaagaagcagctggcctggctcgtcaaccgg
ctgccaggcctgaaggagctggtgctgtcgggctgcccgtgggcgtcggtgtcagcgctg
tgcggcgccagctggcctccgctgcgggcgctcgacctgcgctgggccgagggcgtgaag
gacgctcacatccgcgacctcctgtcccccgactcggactacacgcccggcgcggaggac
cggctgcgtggcgtgtcggagctgcgtctggccggcctggacatcacggacgcgagcgtg
gcgctgctggtgcgcctggccgcggggctctccacgctcgacctagcgcactgcgcgcac
ctcacggaccaggccgtcaacgtgctgacggcgcccggagcccccactcgcgacaccctg
cgccacctcgtcctggccggctgtgcccgcatcacggacgcgtgcctcccactgctggtg
cggtgccctcacctttcccgcgccgacctgcgctcctgcaagctggtgacgcccgaagcc
tgccagcgcctcgtcacagaactctgcccgcagggcacctttgcgctgccggaggaccgg
ctgatcctgcgagtgacgagcactggcagctag
DBGET
integrated database retrieval system
