Lethenteron reissneri (Far Eastern brook lamprey): 133348889
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Entry
133348889 CDS
T09663
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133348889 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133348889 (SMG6)
03032 DNA replication proteins [BR:
lrj03032
]
133348889 (SMG6)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133348889 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
133348889 (SMG6)
DNA replication proteins [BR:
lrj03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
133348889 (SMG6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
COMMD1_N
Motif
Other DBs
NCBI-GeneID:
133348889
NCBI-ProteinID:
XP_061417959
LinkDB
All DBs
Position
28:8606565..8791503
Genome browser
AA seq
1500 aa
AA seq
DB search
MADDVRVVRVTARELCPGASTEPGECAEAPRQRKENRRPDIALYKPRGAREQQSPAASTE
ERARREDVTRCSTASKRRGPTEQPLRMATDRGHNTSAGSTDVVSSGTQEIEHKSSARRAR
GRGGGKAATECTESAGADGRSRAPGGRPPSREEAAQHGRRPERQIYRPARKGDPLPESKW
GLEAPENKATGELTATLERVCLSGDPTEDSHGRPNLSKQDLDGAQEHRAERSAGSEGATK
GKRSRRRRKENKERDYEGEGLLAENTQGDVSSRSDSDVKASKDAHKCDQPNAARKGTVRS
DVKNSSGKPSRGERALNDRYRRAADDRTFSGIGKSRSEKDTNKRNARHECGFVSSDPEEQ
SRSKATSRTRIQQPVAPSAKAEAERAAVGPARRQRGPRRIRGYHPSESDNGKRRRGFSDC
TSSDSAEEFGRSDLEAEKRDERSSAPLGSPIAAALGGNWRPACRDSENRLSPGAGVRDGP
RARGGGGILFLPRAVDAASDAPLPPCSPDRGTHRDAGRGQRALRGRGGDARRLWDPRNPE
RAPAGKMKAPALLFHDTDEDDNGSPSGREEPSVARLPPYPTTCSPLHYRLPGREQPCTFP
VPYAYSMPSFPGISNGSMMYPSAMACGMLPGGFYGGYTGMVPALPLSGGVQTEIKTLLST
ATALEVQLAALLNWDRLGPQDQDLAEHLRTQLVNVYERAVLTDIEVCERAGAEQGLWKYG
FYQAIERLRQQLRDSASHDDAERVNARLLGILDEGLLFYAGLLRSLQDVYVFSLQELGES
PPAGAVSKTVKYALISAQRCMICLGDIARYKEQYNDTNNYGKARSWYLKAQKIAPKNGRP
YNQLAILAIYTRRKVEAVYYYMRSLAASNPILSAKESLISLFEETKRKAVAAERAERRWQ
PEGEVGVRGGAPGLRGAGSGPTAPAADSTRVEIWIHPSPRPAPGGPRRVDKPASPSEHTA
LANAADLNKKFAQSFLYAHGKLFTKIGMERFAPVVCASLREFRALLQHSPCPVGGTRMLQ
LMAINMFAVHNSQLRDADAEDCRSVVQEQATALGQAMFTLLVERCCQLLATSLKAEVQQQ
QGGGGGAALCVSRLHSDVRDLLPGLKVWSDWMLGHPEEWNPPPTSLDIPADVCGDTWSTL
AELCNALAGVAVSEVQLQAQAGPGLVPLVLDEDHALAGFVPLLCAPQEPCFVQEDADQVL
AADCKRVAALQYFLEALCGLEEPLLAYKGGKYVSVAPGRDEPTPSAGPRVHGGDFSRYQG
EDDVLVEEELLASEGSDEESDDIRQLKARRETLTRKVAEQRRRQEQIQAVLEDHSGGGCR
MEMEVVPLFLVPDTNGFVDHLPGLACLLALRRYILVVPLIVINELDGLARGQDARRAVQQ
ARLVQERARAAVAFLEGRFEEREPCLRALTSRGNELESIAFRSEDTAGRQGNNDDLILSC
CLHYCKDKAKDFMPTSKGDPIRLRRDVVLLTDDRNLRLKALTRNVPVKDVPAFLAWANVG
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatgttcgcgtggtccgggtgacggcgagagagctttgtcccggagcctcc
acggagccgggagagtgcgcagaagctccacggcagcggaaggagaaccggcgcccggac
attgccctgtacaagccacggggagcccgcgagcagcagagccccgctgcgagcactgag
gagcgagcgcgcagggaggacgtgacacgatgttccactgccagcaagcgcaggggcccc
accgagcagcccttgcgcatggcgacggatcgcggacacaatacctccgcgggcagcaca
gatgtcgtgagctcgggcactcaagagattgagcataaaagctcggcgaggcgcgcaaga
ggtcgtggcggcggtaaagccgccactgagtgcacggagagcgcgggagcggacggcaga
agccgcgcacccggagggcggcctccatcccgggaggaggcagcacaacacggcaggagg
cctgagaggcaaatctaccgcccggctaggaagggggatccccttccggagtccaagtgg
ggtcttgaggcccccgaaaacaaggcgacaggagagctgactgccactttggagcgcgtc
tgcctgagtggcgacccaaccgaggactcgcacgggcgaccgaatctcagcaagcaggac
cttgatggtgctcaggagcacagagctgagaggagcgcaggcagcgagggcgccacgaag
gggaagaggtcacgcaggcggcggaaagaaaataaggagagagattacgagggtgagggg
ctgcttgcggagaacacgcaaggggatgtgtccagcaggagtgacagtgatgtcaaggca
tccaaagatgcgcataagtgcgatcagccaaatgcggcaagaaaggggacggtgaggagt
gacgtaaaaaactcaagtggtaagccaagtagaggtgaacgtgcactcaatgaccgctat
aggagagctgctgatgacaggacattttctggcataggtaaatcacgctcagaaaaagac
acaaataagagaaatgctcggcacgaatgcggttttgtgagttcggaccccgaggagcag
agtcggtctaaagcgacgtcacgcacgaggattcaacagcccgtggcgccgagcgcaaag
gccgaggccgagagggcggcagtcggtcccgcacgacgccagcgtggcccccgccgcatc
agaggctaccacccgtccgagagcgacaatgggaagcgccggcgcggctttagcgactgc
acttcatccgactcggcagaggagttcggacgcagcgatttggaggccgagaagagggat
gagcgcagttctgcgccgctcggcagccccattgccgcggccctcggtggtaactggcgg
ccggcgtgccgcgacagcgagaaccgactgtccccgggggccggcgtgcgggatgggccc
cgcgctcggggagggggaggaatcctcttcctgcctcgcgccgtggatgccgctagcgac
gcccctctcccgccgtgctcaccggaccgcgggacccaccgcgatgcggggaggggtcag
cgtgctttgaggggccgcggcggcgatgcccggcgcctctgggacccacggaacccggag
cgggccccggcgggaaaaatgaaggcgcccgcgctgctcttccacgacacggacgaggat
gacaatggctccccctcaggccgcgaggagcctagcgttgcacgccttcctccctacccc
accacgtgctccccactgcactaccgcctgccgggtcgcgagcagccgtgcacattcccc
gtgccgtacgcgtattccatgccctcattcccgggcatctccaacggctccatgatgtac
cccagtgccatggcatgcgggatgctgcccggtggcttctacggtggctacacgggcatg
gtgccggccctgccactgagcggtggcgtgcagactgaaatcaagacgctcctgagcact
gccacggcactggaggttcaactggcagcgctgctcaactgggaccgcctcggacctcag
gatcaagatctggccgaacacttgcgcactcagctggtgaacgtgtacgagcgcgcggtg
ctgacggacatcgaggtgtgcgagcgtgccggcgccgagcagggcctctggaagtacggc
ttctaccaggccatcgagcgcctgcgccagcagctacgcgactctgccagccacgacgat
gccgagagggtcaatgcacgccttctgggcatcctcgacgaaggcctgttgttctacgcg
ggcttgctgcggagcctgcaggatgtgtacgtcttcagtctgcaggaacttggcgagagc
ccgcccgctggtgccgtcagtaaaactgtgaaatatgcattgatcagcgctcagaggtgc
atgatctgcttaggagacattgctcgctataaggagcagtacaacgataccaacaattat
ggcaaggccagaagctggtacctgaaggcccagaagatcgctccgaagaatgggaggcct
tataaccagctggccattctcgccatatacacgcggcggaaggttgaagcggtgtactac
tacatgcgcagcctagcggccagcaaccccatcctgtcggccaaggagagcctcatcagt
ctgttcgaagagacgaagagaaaggccgtggcggcggagcgtgcggaacggcgctggcag
cccgagggcgaggtgggcgtgcgggggggagcccccgggctccggggtgccggctccggc
cccaccgcccccgctgcagattccacgcgcgtcgaaatctggatccacccgagccccagg
ccggcgcctggtggcccccggcgcgtggacaagccagccagccccagcgaacacaccgct
ttggccaacgccgccgatctgaacaagaaatttgcgcaaagtttcctgtacgctcatggc
aagctgttcaccaagatcgggatggagaggtttgcgccggtggtgtgtgcgtcgctgcgg
gagttcagggccctgctccagcacagcccctgtcccgtgggcggcacccgcatgctgcag
ctcatggccatcaacatgttcgccgtgcacaacagccagctgagagacgcagatgcggag
gattgccgctcggtggtgcaggagcaagccacggcgctgggtcaagccatgttcaccctc
ctggtggagcgctgctgtcagctgctggccacctccctcaaagcagaggtgcagcagcag
cagggcggtggcggcggcgctgcgttgtgcgtgtcgcgcctgcactcggatgtgcgggac
ctgctgcctggcctcaaggtgtggtccgactggatgctgggtcaccccgaggagtggaac
cccccgcccacctcgctggacatccccgcagacgtgtgcggggacacgtggagcaccctg
gcggagctgtgcaacgcgttggctggtgtggcagtgagcgaggtgcagctgcaagcgcag
gccgggccgggcctggtgccgctggtgctggatgaggaccatgctctcgctggattcgtg
ccgctgctgtgcgcgccgcaggagccctgcttcgtgcaagaggacgccgaccaggtgctc
gcggctgactgcaagcgcgtggcggcgctccagtacttcctcgaggccctgtgcggcctg
gaagagcctctgcttgcctacaagggcggcaagtacgtgtcggtggctccaggacgtgac
gagcccaccccatcagcagggccacgtgtccacgggggggacttctccaggtaccaggga
gaggatgacgtgctggtggaggaggagctgctggcgagcgaggggagcgatgaggagagt
gatgacatccggcagttgaaggcgcgcagggagacgctcacgcgcaaggtggcagagcag
cggcgccggcaggagcagatacaggcggtgctggaggaccattcgggcggggggtgccgc
atggagatggaggtcgtgccgctcttcctggtgcccgacaccaacggcttcgtggaccac
ctgccggggttggcgtgcctgctcgcgctgcgccgctacatcctcgtcgtgccgctcatc
gtgattaacgagctggacgggctggcgaggggccaggacgcgcggcgcgcggtgcagcag
gcgaggctggtgcaggagcgggcgcgggccgccgtcgccttcctggaagggcgcttcgag
gagcgcgagccgtgcctgcgggcgctcaccagccgcggcaacgagctcgagtccatcgcc
ttccgcagcgaggacacggccgggcggcaggggaacaacgatgacctcatcctgtcctgc
tgcctgcactactgcaaggacaaagccaaggacttcatgccaaccagtaaaggagacccg
atccgcctgcgccgcgacgtggtgctgctcacggacgaccgcaacctgcgcctcaaggcc
ctgacgaggaacgtaccggtcaaggacgtgccggccttcctcgcctgggccaacgtgggc
tga
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