Lethenteron reissneri (Far Eastern brook lamprey): 133356245
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Entry
133356245 CDS
T09663
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04115
p53 signaling pathway
lrj04145
Phagosome
lrj04148
Efferocytosis
lrj04350
TGF-beta signaling pathway
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
lrj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
133356245
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133356245
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
133356245
04148 Efferocytosis
133356245
09143 Cell growth and death
04115 p53 signaling pathway
133356245
09144 Cellular community - eukaryotes
04510 Focal adhesion
133356245
09142 Cell motility
04820 Cytoskeleton in muscle cells
133356245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lrj04131
]
133356245
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133356245
Membrane trafficking [BR:
lrj04131
]
Endocytosis
Phagocytosis
Opsonins
133356245
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133356245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CCN
cEGF
Laminin_G_3
TSP1_ADAMTS
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
133356245
NCBI-ProteinID:
XP_061429621
LinkDB
All DBs
Position
53:complement(10656141..10702407)
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AA seq
1165 aa
AA seq
DB search
MCLFKGWPAVVALVLLNIFGLHGFEYNGGGGGGGMKAFDLFELTKLSRSNAGVKPVKGPE
RGPAFKIVKAAKIPAVTGQPLEELVEALRRDEGFTFQATLRQEKRSTGTLVSVGPLAKTS
PRLFEIISNGRADTLDLAYAVNGEQSVFSFEEVELATPQWKNVTLHVSGEDAELYVGCER
VDTLTLEGLNFEQLAAEGNALRLGKGALKDADDFKGALQNIRFVFGTTVEDILRSKGCPA
AQRTPVLAGNKLNFMNPQLGGLGDQCDMSCNAVSEMVRELRGIQRAVTTLVSGFDDVRNQ
TDLISKGIGFNKRGECHFEGTQFANGTNWTVDTCTSCTCEESVTFCRQISCQEVSCNNAT
TPEGECCPTCYVLEEGWSPWSEWTSCTVSCGRGLQQRGRSCDRIKHECQGPSIQTRTCHQ
RECDKRIRQDGGWSHWSPWSSCSATCGVGSSTRMRLCNSPTPQLGGEDCAGSGRDTKECN
LMPCPVDGQWGPWSLWSTCSVTCAGGSRTRMRLCNNPEPKHGGRRCAGLSSDTGVCNTQD
CPIDGCLSNPCFAGTKCISFVDGSWKCGACPLGYRGDGLHCEDIDECTEVPDVCFSTTSV
SRCTNLNPGFKCLPCPPRYSGTQPQGLGLEDAKTNKQVCVPKNPCEDGSHNCHVDADCVY
LGVHTELVFRCECKTGFAGNGFVCGEDIDLDGWPNKELPCVANATYHCLKDNCPELPNSG
QEDHDKDGLGDACDNDDDNDGYPDDRDNCPMLFNPRQYDRDRDTVGDLCDNCPEHPNADQ
RDTDRNGVGDACSPDIDGDSVLNEGDNCPYVYNSDQRDFDTDGVGDMCDNCPLQYNPDQR
DSDSDLVGDTCDSNEDIDEDGHQNNLDNCPYIPNSNQADHDGDGIGDACDHDDDNDGIPD
ERDNCRLVANPDQLDSNGDGRGDICQYDFDHDNVTDTEDVCPENFAITSTDFQRFQMVPL
DPTGTSQIDPNWVVRHQGKELVQEVNCDPGLAIGYDEFNAVDFSGTFYINTDRDDDYAGF
VFGYQSSARFYVVMWKQITQSYWQDTPTWAQGFAGLQIKVVNSTTGPGEHLRNALWHTGN
TPGQVRLLWHDPKTIGWKDYTAYRWQLTHRPKSGLIRVVMYEGRHIMADSGPLYDKTYTG
GRLGLFVFSQESVYFSDMKYKCKDW
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtgtttgttcaaaggatggccggcggtggtggctcttgtgttactcaacatcttcgga
cttcacggctttgagtacaacggtggcggcggaggcggcgggatgaaagcgttcgacctc
ttcgagctcaccaagctgagccgcagcaacgccggcgtgaagcccgtcaaggggcccgag
cggggccccgccttcaagatcgtcaaggcggccaagatcccggcggtgacgggccagccc
ctcgaggagctcgtggaggcgctgcgccgtgacgagggcttcaccttccaggcgacgctg
cggcaggagaagcgcagcaccggcacgctcgtgtccgtcgggcccctggcgaagacgtcg
ccgcgcctcttcgagatcatctcgaacgggcgcgccgacacgctcgacctggcgtacgcg
gtgaacggcgagcagagcgtcttctccttcgaggaggtggagctggcgacgccgcagtgg
aagaacgtgacgctgcacgtgtcgggcgaggacgccgagctgtacgtgggctgcgagcga
gtggacacgctcaccctggagggcctcaacttcgagcagctcgcggccgagggcaacgcg
ctacggctcgggaagggcgccctcaaggacgccgacgacttcaagggggccttgcaaaac
attcgcttcgtgttcggcaccacggtggaggacatcctacgaagcaagggctgccctgcc
gcccagcggacaccggtgcttgcaggaaacaagctgaacttcatgaacccgcagctcggg
ggattgggtgaccagtgcgacatgtcctgcaacgccgtgtcggagatggtccgggagctc
cgtggcattcagagggcggtcaccacgttagtgagcggcttcgacgatgtgagaaaccag
acggacctcatcagcaaggggatcggcttcaacaagagaggcgagtgccacttcgaaggg
acgcagtttgccaacggcaccaactggacggtggacacctgcacgtcctgcacatgtgag
gaatccgtgacattttgccggcaaatcagctgccaagaggtttcgtgcaacaacgccacc
acgccggagggcgagtgctgcccgacgtgctatgtgctggaggagggctggtcgccgtgg
tccgagtggacgtcgtgcaccgtgtcttgcgggcgcgggctgcagcagcgcggccgctcg
tgcgaccgcatcaagcacgagtgccagggcccgtccatccagacgcgcacgtgccaccag
cgggagtgcgacaagcgcatccgccaggacggcggctggagccactggtcgccgtggtct
tcgtgctcggcgacgtgcggcgtgggctccagcacgcgcatgcggctctgcaactccccg
acgccgcagttgggcggcgaggactgcgctggcagcgggcgcgacaccaaggagtgcaat
ctgatgccctgccccgtggacgggcagtggggcccctggtctctgtggtcgacgtgctcc
gtgacctgcgccgggggctcgcggacgcgcatgcgcctctgcaacaaccccgagcccaag
cacggcgggcggcgctgcgcgggactcagctccgacaccggcgtctgcaacacccaggac
tgtcccatcgacggctgtctctccaacccgtgcttcgcgggaacaaagtgcatcagcttc
gtcgacggctcgtggaagtgcggcgcctgcccgctcggttaccgcggcgatggcctgcac
tgcgaggacatcgacgagtgcacggaggtgccggatgtctgcttctcgacaacgagcgtg
tcgcgctgcaccaacctgaacccgggcttcaagtgcctcccgtgccccccgcgctactcg
ggcacccagccccagggtctcggactggaggacgcaaagaccaataagcaggtgtgcgtg
cccaagaacccgtgcgaggacgggagccacaactgccacgtggacgcggactgcgtgtac
ctgggcgtgcacacggagctcgtgttccgctgcgagtgcaagacagggttcgccggcaac
ggcttcgtgtgcggcgaggacattgaccttgacgggtggcccaacaaggagctgccctgc
gtggccaacgccacctaccactgcctcaaggataactgccccgagctgcccaactccggg
caggaggaccacgacaaggatggccttggcgacgcctgcgacaacgacgacgacaacgac
ggatatcccgatgacagggacaactgcccgatgctgttcaacccgcggcagtacgacaga
gaccgcgacacggtcggtgacctctgcgacaactgccccgaacaccccaacgccgaccaa
cgcgacacggaccgcaacggcgtgggagacgcgtgctcacccgacatcgacggagacagc
gttctcaacgagggcgacaactgcccgtacgtgtacaacagcgaccagcgcgacttcgac
acggatggcgtgggagacatgtgcgacaactgccccctgcagtacaaccccgaccagcgc
gactccgactcggatctggtgggcgacacgtgcgacagcaacgaggacatcgacgaggac
ggccaccagaacaacctggacaactgcccgtacatccccaactcgaaccaggccgaccac
gacggcgacggcatcggagacgcctgcgaccacgacgacgacaacgacggcattcccgac
gagcgcgacaactgccgcctcgtcgcaaaccccgaccagctcgactccaacggtgacggc
cgtggggacatctgccagtacgactttgaccacgacaacgtgacggacaccgaggacgtg
tgcccagagaacttcgccatcaccagcacggacttccagcgcttccagatggtgccgctc
gaccccacgggcacctcgcagatcgaccccaactgggtggtgcgccaccagggcaaggag
ctcgtgcaggaggtcaactgcgacccggggctcgccattggctacgacgagttcaacgcg
gtggacttcagcggaacgttctacatcaacacggaccgcgacgacgactacgcgggcttc
gtgttcggctaccagtcgagcgcgcgcttctacgtggtcatgtggaagcagatcacgcag
tcctactggcaagacacgcccacgtgggcccagggcttcgccggcctgcagatcaaggtg
gtgaactccacgacggggcccggcgagcacctccgcaacgccctctggcacaccggcaac
acccccgggcaggttcgtctgctgtggcacgacccaaaaaccatcggctggaaggattac
acggcgtacaggtggcagctgactcaccggcccaaatccggactcatcagggtggtgatg
tacgagggcaggcacatcatggccgactcgggccccctgtacgacaagacgtacaccggg
ggacgtctcggtctgttcgtcttctcccaggagagcgtctacttctcggacatgaagtac
aagtgcaaagattggtag
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