Lethenteron reissneri (Far Eastern brook lamprey): 133356245
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Entry
133356245 CDS
T09663
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj04115
p53 signaling pathway
lrj04145
Phagocytosis
lrj04148
Efferocytosis
lrj04350
TGF-beta signaling pathway
lrj04510
Focal adhesion
lrj04512
ECM-receptor interaction
lrj04518
Integrin signaling
lrj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
133356245
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133356245
04518 Integrin signaling
133356245
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
133356245
04148 Efferocytosis
133356245
09143 Cell growth and death
04115 p53 signaling pathway
133356245
09144 Cellular community - eukaryotes
04510 Focal adhesion
133356245
09142 Cell motility
04820 Cytoskeleton in muscle cells
133356245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lrj04131
]
133356245
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lrj00536
]
133356245
Membrane trafficking [BR:
lrj04131
]
Endocytosis
Phagocytosis
Opsonins
133356245
Glycosaminoglycan binding proteins [BR:
lrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133356245
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
EGF_3
cEGF
Laminin_G_3
TSP1_ADAMTS
TSP1_CCN
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
133356245
NCBI-ProteinID:
XP_061429621
LinkDB
All DBs
Position
53:complement(10656141..10702407)
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AA seq
1165 aa
AA seq
DB search
MCLFKGWPAVVALVLLNIFGLHGFEYNGGGGGGGMKAFDLFELTKLSRSNAGVKPVKGPE
RGPAFKIVKAAKIPAVTGQPLEELVEALRRDEGFTFQATLRQEKRSTGTLVSVGPLAKTS
PRLFEIISNGRADTLDLAYAVNGEQSVFSFEEVELATPQWKNVTLHVSGEDAELYVGCER
VDTLTLEGLNFEQLAAEGNALRLGKGALKDADDFKGALQNIRFVFGTTVEDILRSKGCPA
AQRTPVLAGNKLNFMNPQLGGLGDQCDMSCNAVSEMVRELRGIQRAVTTLVSGFDDVRNQ
TDLISKGIGFNKRGECHFEGTQFANGTNWTVDTCTSCTCEESVTFCRQISCQEVSCNNAT
TPEGECCPTCYVLEEGWSPWSEWTSCTVSCGRGLQQRGRSCDRIKHECQGPSIQTRTCHQ
RECDKRIRQDGGWSHWSPWSSCSATCGVGSSTRMRLCNSPTPQLGGEDCAGSGRDTKECN
LMPCPVDGQWGPWSLWSTCSVTCAGGSRTRMRLCNNPEPKHGGRRCAGLSSDTGVCNTQD
CPIDGCLSNPCFAGTKCISFVDGSWKCGACPLGYRGDGLHCEDIDECTEVPDVCFSTTSV
SRCTNLNPGFKCLPCPPRYSGTQPQGLGLEDAKTNKQVCVPKNPCEDGSHNCHVDADCVY
LGVHTELVFRCECKTGFAGNGFVCGEDIDLDGWPNKELPCVANATYHCLKDNCPELPNSG
QEDHDKDGLGDACDNDDDNDGYPDDRDNCPMLFNPRQYDRDRDTVGDLCDNCPEHPNADQ
RDTDRNGVGDACSPDIDGDSVLNEGDNCPYVYNSDQRDFDTDGVGDMCDNCPLQYNPDQR
DSDSDLVGDTCDSNEDIDEDGHQNNLDNCPYIPNSNQADHDGDGIGDACDHDDDNDGIPD
ERDNCRLVANPDQLDSNGDGRGDICQYDFDHDNVTDTEDVCPENFAITSTDFQRFQMVPL
DPTGTSQIDPNWVVRHQGKELVQEVNCDPGLAIGYDEFNAVDFSGTFYINTDRDDDYAGF
VFGYQSSARFYVVMWKQITQSYWQDTPTWAQGFAGLQIKVVNSTTGPGEHLRNALWHTGN
TPGQVRLLWHDPKTIGWKDYTAYRWQLTHRPKSGLIRVVMYEGRHIMADSGPLYDKTYTG
GRLGLFVFSQESVYFSDMKYKCKDW
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtgtttgttcaaaggatggccggcggtggtggctcttgtgttactcaacatcttcgga
cttcacggctttgagtacaacggtggcggcggaggcggcgggatgaaagcgttcgacctc
ttcgagctcaccaagctgagccgcagcaacgccggcgtgaagcccgtcaaggggcccgag
cggggccccgccttcaagatcgtcaaggcggccaagatcccggcggtgacgggccagccc
ctcgaggagctcgtggaggcgctgcgccgtgacgagggcttcaccttccaggcgacgctg
cggcaggagaagcgcagcaccggcacgctcgtgtccgtcgggcccctggcgaagacgtcg
ccgcgcctcttcgagatcatctcgaacgggcgcgccgacacgctcgacctggcgtacgcg
gtgaacggcgagcagagcgtcttctccttcgaggaggtggagctggcgacgccgcagtgg
aagaacgtgacgctgcacgtgtcgggcgaggacgccgagctgtacgtgggctgcgagcga
gtggacacgctcaccctggagggcctcaacttcgagcagctcgcggccgagggcaacgcg
ctacggctcgggaagggcgccctcaaggacgccgacgacttcaagggggccttgcaaaac
attcgcttcgtgttcggcaccacggtggaggacatcctacgaagcaagggctgccctgcc
gcccagcggacaccggtgcttgcaggaaacaagctgaacttcatgaacccgcagctcggg
ggattgggtgaccagtgcgacatgtcctgcaacgccgtgtcggagatggtccgggagctc
cgtggcattcagagggcggtcaccacgttagtgagcggcttcgacgatgtgagaaaccag
acggacctcatcagcaaggggatcggcttcaacaagagaggcgagtgccacttcgaaggg
acgcagtttgccaacggcaccaactggacggtggacacctgcacgtcctgcacatgtgag
gaatccgtgacattttgccggcaaatcagctgccaagaggtttcgtgcaacaacgccacc
acgccggagggcgagtgctgcccgacgtgctatgtgctggaggagggctggtcgccgtgg
tccgagtggacgtcgtgcaccgtgtcttgcgggcgcgggctgcagcagcgcggccgctcg
tgcgaccgcatcaagcacgagtgccagggcccgtccatccagacgcgcacgtgccaccag
cgggagtgcgacaagcgcatccgccaggacggcggctggagccactggtcgccgtggtct
tcgtgctcggcgacgtgcggcgtgggctccagcacgcgcatgcggctctgcaactccccg
acgccgcagttgggcggcgaggactgcgctggcagcgggcgcgacaccaaggagtgcaat
ctgatgccctgccccgtggacgggcagtggggcccctggtctctgtggtcgacgtgctcc
gtgacctgcgccgggggctcgcggacgcgcatgcgcctctgcaacaaccccgagcccaag
cacggcgggcggcgctgcgcgggactcagctccgacaccggcgtctgcaacacccaggac
tgtcccatcgacggctgtctctccaacccgtgcttcgcgggaacaaagtgcatcagcttc
gtcgacggctcgtggaagtgcggcgcctgcccgctcggttaccgcggcgatggcctgcac
tgcgaggacatcgacgagtgcacggaggtgccggatgtctgcttctcgacaacgagcgtg
tcgcgctgcaccaacctgaacccgggcttcaagtgcctcccgtgccccccgcgctactcg
ggcacccagccccagggtctcggactggaggacgcaaagaccaataagcaggtgtgcgtg
cccaagaacccgtgcgaggacgggagccacaactgccacgtggacgcggactgcgtgtac
ctgggcgtgcacacggagctcgtgttccgctgcgagtgcaagacagggttcgccggcaac
ggcttcgtgtgcggcgaggacattgaccttgacgggtggcccaacaaggagctgccctgc
gtggccaacgccacctaccactgcctcaaggataactgccccgagctgcccaactccggg
caggaggaccacgacaaggatggccttggcgacgcctgcgacaacgacgacgacaacgac
ggatatcccgatgacagggacaactgcccgatgctgttcaacccgcggcagtacgacaga
gaccgcgacacggtcggtgacctctgcgacaactgccccgaacaccccaacgccgaccaa
cgcgacacggaccgcaacggcgtgggagacgcgtgctcacccgacatcgacggagacagc
gttctcaacgagggcgacaactgcccgtacgtgtacaacagcgaccagcgcgacttcgac
acggatggcgtgggagacatgtgcgacaactgccccctgcagtacaaccccgaccagcgc
gactccgactcggatctggtgggcgacacgtgcgacagcaacgaggacatcgacgaggac
ggccaccagaacaacctggacaactgcccgtacatccccaactcgaaccaggccgaccac
gacggcgacggcatcggagacgcctgcgaccacgacgacgacaacgacggcattcccgac
gagcgcgacaactgccgcctcgtcgcaaaccccgaccagctcgactccaacggtgacggc
cgtggggacatctgccagtacgactttgaccacgacaacgtgacggacaccgaggacgtg
tgcccagagaacttcgccatcaccagcacggacttccagcgcttccagatggtgccgctc
gaccccacgggcacctcgcagatcgaccccaactgggtggtgcgccaccagggcaaggag
ctcgtgcaggaggtcaactgcgacccggggctcgccattggctacgacgagttcaacgcg
gtggacttcagcggaacgttctacatcaacacggaccgcgacgacgactacgcgggcttc
gtgttcggctaccagtcgagcgcgcgcttctacgtggtcatgtggaagcagatcacgcag
tcctactggcaagacacgcccacgtgggcccagggcttcgccggcctgcagatcaaggtg
gtgaactccacgacggggcccggcgagcacctccgcaacgccctctggcacaccggcaac
acccccgggcaggttcgtctgctgtggcacgacccaaaaaccatcggctggaaggattac
acggcgtacaggtggcagctgactcaccggcccaaatccggactcatcagggtggtgatg
tacgagggcaggcacatcatggccgactcgggccccctgtacgacaagacgtacaccggg
ggacgtctcggtctgttcgtcttctcccaggagagcgtctacttctcggacatgaagtac
aagtgcaaagattggtag
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integrated database retrieval system
