Lethenteron reissneri (Far Eastern brook lamprey): 133356549
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Entry
133356549 CDS
T09663
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03018
RNA degradation
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133356549 (LSM3)
09123 Folding, sorting and degradation
03018 RNA degradation
133356549 (LSM3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrj03019
]
133356549 (LSM3)
03041 Spliceosome [BR:
lrj03041
]
133356549 (LSM3)
Messenger RNA biogenesis [BR:
lrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133356549 (LSM3)
mRNA degradation factors
5'-3' decay
Lsm complex
133356549 (LSM3)
Spliceosome [BR:
lrj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133356549 (LSM3)
Complex C
U2 snRNP components
133356549 (LSM3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
DUF8043
RimP_C
vATP-synt_E
HydF_dimer
Peptidase_M16_M
Motif
Other DBs
NCBI-GeneID:
133356549
NCBI-ProteinID:
XP_061430105
LinkDB
All DBs
Position
54:complement(11531927..11534725)
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AA seq
102 aa
AA seq
DB search
MADDVEAPQTGNTVEEPLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVILVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgacgtggaggcgccccaaacgggaaacacggtggaggagcctctggatctc
atccgcctgagtctggacgagcgaatctacgtgaagatgcgtaacgagcgggagctgcgc
ggccgcctccacgcctacgaccagcacttgaacatgatcctgggcgacgtagaggagacg
gtgacgaccgtggagattgacgaagagacctacgaggagatttacaagtccaccaagcgg
aacatcccgatgctgttcgtgcgaggcgacggggtcattctggtggcgccgcccctgcgt
gtcggctga
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