Lethenteron reissneri (Far Eastern brook lamprey): 133358213
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Entry
133358213 CDS
T09663
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lrj
Lethenteron reissneri (Far Eastern brook lamprey)
Pathway
lrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133358213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrj03041
]
133358213
Spliceosome [BR:
lrj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133358213
Complex C
U5 SnRNP specific factors
133358213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
Septin
MMR_HSR1
Roc
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
133358213
NCBI-ProteinID:
XP_061432438
LinkDB
All DBs
Position
61:443919..488347
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AA seq
972 aa
AA seq
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MDTDLYDEFGNYIGPELDSDDEEDDEVERDDQPRDEAEEDEEEAGDGEEEPVGMEVVLHE
DKKYYPTAEEVYGPEVETVVQEEDTQPLTEPIIKPVKTKKFSMVEQELPPTVYEMEFLAD
LMDSPDLIRNIAVCGHLHHGKTSFVDCLIEQTHPEIRKRDDKDLRYTDTLFTEQERGVSI
KSTPVTMVLPDSKGKSFLFNIMDTPGHVNFSDEATASFRLCDGVVLFIDAAEGVMLNTER
LIKHAVQERLAITVCINKIDRLVLELKLPPTDAYFKLRHIVDEVNSLLSLYSESEDGLVV
SPLLGNVCFASSEYSVCFTLGSFAKIYSDVYGDVSYQEFARRLWGDVYFNPKTRRFTKKQ
PDTNAQRSFVEFVLEPVYKIFSQVVGDVDVLLPRTLEELGVHLTKEELKMNIRPLLRLVC
KRFFGDMTGLVDMCVEHVPSPQAGARTKIEHTYTGPLDSELADAMLDCDPDGPLMCHTTK
MYSTEDGVHFHAFGRVLGGTLHAGQDARVLGENYTLEDEEDSRICAVGRLWISVARYRIE
VSRVPAGNWVLIEGVDQPIVKTATITEPTGTDEAQIFRPLKFNTSSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPVLTTKVEESGEHIILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
SFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DEPIRNVKFKILDAVIANEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVMFNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacacagacctctatgatgagtttggcaattacatcgggccggagctggactcggac
gacgaggaggatgatgaggtcgaacgagatgaccaaccaagagacgaggctgaagaggat
gaggaggaggcaggtgacggtgaagaggagcccgtgggaatggaggtggtgctgcatgag
gataagaagtactaccccactgctgaagaggtgtacggaccagaggtggagactgtggtg
caggaagaggacacgcagccgctcactgagccaatcatcaaacccgtgaaaacgaagaaa
ttcagcatggtggagcaggagctgccacccacagtctacgaaatggagtttttggccgat
ctgatggacagccctgacctcatcaggaacatagcggtgtgcgggcacctgcatcacgga
aagacgtcgttcgtggactgcttgatcgagcaaacgcatcctgaaatccgcaagagagat
gacaaagatctgcggtacaccgacacgctgttcacggagcaagagagaggggtgagcatc
aagagcactccggtgaccatggtgctgcccgactcgaaggggaaatccttcctcttcaac
atcatggacacgccggggcacgtcaatttctccgacgaagccacggcctccttcaggctg
tgcgacggcgttgtgctcttcattgacgcagcagagggggtgatgctcaacaccgagcgg
ctgatcaagcacgcggtccaggagcgcctcgccatcaccgtgtgcatcaacaagatcgac
cggctggtgctggagctcaagctgccgcccaccgacgcctacttcaagttgcgacacatt
gtggacgaggtcaacagcctgttgagcttgtactcggagagcgaggacggcctcgtggtg
tcgccactgctgggcaacgtctgcttcgccagctcggagtacagcgtctgcttcacgctc
ggctccttcgccaagatctactccgacgtctacggcgatgtcagttaccaagagtttgcc
agacgcctctggggagacgtttacttcaaccccaagacgcggcgcttcaccaagaagcag
ccggacaccaacgctcagcgcagtttcgtggagttcgtcctcgagccggtctacaagatc
ttctcgcaggtggtgggggacgtggatgtgctgcttccacggacgctggaggagctcggc
gtgcatctcacgaaggaagagctcaagatgaacatccgccccctcctgcgcctcgtctgc
aagcgcttcttcggcgacatgaccgggctggtggacatgtgcgtggagcacgtgccgtcg
ccgcaagccggcgcgcgcaccaagattgagcacacctacacgggccccctggactcggag
ctggccgacgccatgctggactgtgaccccgacgggcctctcatgtgccacacgaccaag
atgtacagcacggaggacggcgtgcacttccacgcgtttggccgtgtgctcggcggcacg
ctgcacgcggggcaggacgcccgcgtgctcggggagaactacacgctggaggacgaggag
gactcgcgcatctgcgccgtcgggcgcctctggatctccgtggcgaggtaccgcattgaa
gtgagcagagtcccggctggaaactgggtgctcatcgaaggcgtggatcagcccattgtg
aagacggctacaatcacagagcccacaggcaccgacgaggcccagatcttccgaccgctc
aagttcaacacgtcgtctgtcatcaagattgccgtcgagcccgtgaacccgtcggagctg
ccgaagatgttggacggcctgcgtaaggtcaacaagagttatcccgtcctcacgaccaag
gtggaggaatcgggggagcacatcatcctgggcacgggggagctctacctggactgcgtg
atgcacgaccttcgcaagatgtactccgagatcgacatcaaggttgctgaccctgtcgtg
tctttctgtgagaccgtggtggagacctcctccttgaagtgctttgctgagactcccaac
aagaagaacaagatcacaatgattgccgagccgctggagaaaggcttggccgaggacatc
gagaacgaggtggtgcaaatcacctggaacaggaagaagctcggagagtttttccagacc
aagtacgactgggatctgctcgccgcccggtccatctgggccttcggccccgacaccact
gggcccaacatcctggtggacgacaccctgccttcagaggtggacaaggcgctgctgggc
tcggtgaaggacagcatcgtgcagggctttcagtggggcactcgcgagggcccactgtgc
gatgagccaatccgcaatgtgaagttcaagatcctggacgcggtcatcgccaatgagccg
ctgcaccggggcggcggtcagatcatcccgacggcacgccgggttgtctactcggcgttc
ctcatggcgacgccgcgtctcatggagccctactacttcgtggaggtgcaggccccggcc
gactgcgtgtctgccgtctacaccgtgctggctcggcgaagaggccacgtgactcaggac
gcgcccatccccggctcgccgctctacaccatcaaggctttcatccccgccatcgactcg
ttcgggttcgagaccgaccttcggacgcacacgcaggggcaggccttctgcctgtccgtg
ttccaccactggcagatcgtgccaggagatcccttggacaagagcattgtgatccgtcca
ctggagccgcagccggcccctcacctcgccagggaattcatgatcaagactcgtcgccga
aaggggctgagcgaggacgtaagcatcagcaagttcttcgacgaccccatgttgctggag
ctggccaaacaggacgtcatgttcaactacccgatgtga
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