Pseudolactococcus raffinolactis: CMV25_00765
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Entry
CMV25_00765 CDS
T05231
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lrn
Pseudolactococcus raffinolactis
Pathway
lrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMV25_00765 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrn03019
]
CMV25_00765 (rnr)
03016 Transfer RNA biogenesis [BR:
lrn03016
]
CMV25_00765 (rnr)
Enzymes [BR:
lrn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CMV25_00765 (rnr)
Messenger RNA biogenesis [BR:
lrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CMV25_00765 (rnr)
Transfer RNA biogenesis [BR:
lrn03016
]
Prokaryotic type
tRNA degradation factors
CMV25_00765 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ATC60504
LinkDB
All DBs
Position
complement(162840..165143)
Genome browser
AA seq
767 aa
AA seq
DB search
MKLSKKVTDFLAQMPSKSISPKMLANNLGLADDAGDYKHLLKTIAQLEESKAIEVTAAGN
IALPQPEAEVLEGTFSANPRGFGFVRIGENEPDVFVKRGNTKFAMNEDVVEVKITSPANP
LKGNEAEGKVVAIKSRAVTSLVGEFYAFDEEEKKNSGSLLGYVVNKNKKIPFRTNISKKG
LHPEVGDIVRVDITHYPDRDFPEVLQGLVTEIIGKATDTGIDVLEVLESLGIPSPFPEDV
IAEANAVPDEIEEKDIIDRVDYRDEITFTIDGADAKDLDDAVHIKALDNGNIELGVHIAD
VSYYVTEGSALDREALNRGTSTYVTDRVVPMLPERLSNGICSLNPRVNRFTQSCVMEINP
DGHVVNYKISQSVIKTTERMTYSDVNEMLAGNQEFLEKFAVIAESVEQMAKLHAILLGMR
ARRGSIDFETQEAKIIVDKLGKPIEIQVRKRGTAEMMIESFMLIANETVARSFATRELPF
IYRVHEHPKADKLTRFIDFASVFGIPLKGTPEKMQSKDLQDFMLQIKGQPGEIVLSTMLL
RSMQQARYDEDNLGHFGLAAEYYTHFTSPIRRYPDLLVHRLIRAESHPTTEVIEHFEEII
PEVAKLTSSRERRAINAERAVEAMKKAEYMESYVGTEYDVTISSVTRFGFFVSLPNTIEG
LVHMSTLGDDFYNFNERDLTLKGERTGKVFRMGQPVKVKLVKADKITGDIDFEHVDSDLD
VVEAVEKRSRESRGGRDSRDKRPDWKKNKDKDKKPFHKKGGKPARKK
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaagtaaaaaagtaactgattttttggctcagatgccttcaaaatcaatctcg
ccaaaaatgttagcaaacaatcttggattagctgacgatgctggcgattataagcatttg
ctcaaaacaattgcccaattagaagaaagtaaagctatcgaagtgacagctgcgggcaat
attgccctaccacagccagaagcagaagttctagaaggaactttctctgccaatccgcgt
ggttttggtttcgtcagaatcggtgaaaatgaaccggacgtctttgtgaaacgtggcaac
acgaaatttgccatgaacgaagatgttgtagaagttaaaatcacgtcaccagctaatcca
cttaaaggcaatgaagccgaaggtaaagtcgtggctattaagtctcgcgctgtgacaagc
ctagtcggtgagttttacgcttttgacgaggaagagaaaaaaaatagcggctcgctctta
ggctacgttgtcaataaaaacaagaaaattccgtttagaaccaacatttctaaaaaaggc
ttgcacccagaagtcggggatattgttcgtgtggatattacccactatcctgaccgtgac
tttccagaggtgctccaaggcttagttactgagattattggtaaagcaacggatacaggg
attgacgttttagaagttttggaatcgctcggtattccatcaccattcccagaagacgtc
atcgctgaagctaatgctgttccagatgaaatcgaagaaaaagatatcatcgatcgtgtt
gactatcgtgatgaaattactttcaccatcgatggcgcagatgcgaaagacttggatgat
gccgttcatatcaaagcccttgataacggcaacattgagctgggtgtgcatatcgccgac
gtcagctactatgtgactgaaggttctgcccttgaccgagaagccctcaaccgtgggaca
tcgacttacgtcacagaccgtgttgtaccgatgttacctgaacgcttgtcaaatggtatc
tgttcactgaatccgcgtgtaaatcgcttcacgcagtcatgtgtcatggaaattaaccct
gacggccatgttgttaattacaaaatttctcagtctgtcattaaaacaacggaacgtatg
acctattctgatgtcaacgaaatgctcgctggcaatcaagaatttttggaaaaatttgcg
gtgattgcagaatcagtagaacaaatggccaaactccatgccattttactcggcatgcgt
gcccgtcgtgggtcaatcgactttgaaacgcaagaagcaaaaatcatcgtcgataaactt
ggtaaaccaatcgagattcaagttcgcaaacgcggaacagctgagatgatgatcgagtcc
ttcatgctgattgccaatgaaaccgttgcgcgtagctttgcgacacgtgaattgccattt
atctaccgggtgcatgagcatccaaaagctgacaaattaacccgtttcattgattttgca
tcagtcttcggtattcctttgaaagggacgcctgaaaaaatgcagtcaaaagacttgcaa
gatttcatgcttcaaatcaaaggtcaacctggtgaaatagtgctctcgactatgcttttg
cgctcaatgcaacaagcgcgttatgatgaagataacctcggtcacttcggtctagctgcg
gagtactacacgcatttcacatcaccgattcgtcgttatccagatttactggtgcatcgc
ttgatccgtgctgaaagccatccgacgactgaagtcatcgagcatttcgaagaaattatc
cctgaagtggctaagctcacatcgtctcgtgaacgccgcgccatcaatgcggaacgtgcc
gttgaagctatgaaaaaagcagagtacatggaaagttatgtgggtaccgagtacgacgtg
acgatttcatctgtgacacgctttggtttcttcgtgtcgcttccgaacaccattgaaggc
ttggtccacatgtcgacgctgggtgatgatttctacaactttaacgagcgcgatctgacc
ctcaaaggcgagcgcacgggcaaagtgttccgcatgggacagcctgttaaagtcaagttg
gtgaaagcggataaaatcaccggtgatattgactttgaacatgtcgacagcgatttagac
gtcgttgaagctgttgagaaacgtagtagagagagccggggcggacgtgattcacgtgat
aaacgccctgactggaagaaaaataaagataaagacaagaaaccttttcataaaaaaggc
ggcaaacctgctagaaaaaaatag
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