Pseudolactococcus raffinolactis: CMV25_01940
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Entry
CMV25_01940 CDS
T05231
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lrn
Pseudolactococcus raffinolactis
Pathway
lrn03030
DNA replication
lrn03430
Mismatch repair
lrn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMV25_01940
03430 Mismatch repair
CMV25_01940
03440 Homologous recombination
CMV25_01940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrn03032
]
CMV25_01940
03400 DNA repair and recombination proteins [BR:
lrn03400
]
CMV25_01940
Enzymes [BR:
lrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CMV25_01940
DNA replication proteins [BR:
lrn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CMV25_01940
DNA repair and recombination proteins [BR:
lrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CMV25_01940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
RRM_1
Motif
Other DBs
NCBI-ProteinID:
ATC60727
UniProt:
A0A290PX87
LinkDB
All DBs
Position
complement(399049..402171)
Genome browser
AA seq
1040 aa
AA seq
DB search
MYAQLNTKTVFSFMDATVKLTDYITAAKTLGYQTLGISDVDNLHAAHQFITQAKAAGIQP
VIGYETTLLLDGLAINFTFIAKTNAGLQNLYSISSKKNFGYNNFSDIHSHLGDVALILPA
DSAVDSILTHLPQNDVFVGLAQPMAQGFLRPTIPFLSVRYLNAGDAETLAILHHVKNGTK
YDDSLTSNHFESLRLESEVRALFDQQSLKNLDRLVSEISYDIALDTLALPRFNPEKPAVA
ELRETAETFLKASNLTSAPYQTRLDHELGVIHEMGFDDYFLIVADVIRYARSQQIYTGMG
RGSALGSLVAYALQITGVDPVANNLLFERFLNPERASLPDIDIDMPDNQRAEILTYVKNR
YGSSHVAQIMTFSTFGMKQSFRDVAKVFGMTEVEISHVSSMIGRSDNLAQEYEKNNRFRA
EIINDSRLQKIFAYAQKIEGMPRQKSVHASGVVLAAHDLTDYLPLAPGETLPITQFEAHD
VEAIGLIKFDFLSIKNLTFINDMRDLVAKKHEQQIDISQIDLNDDATLEIFRKGQTLGIF
QFENPQMMNFLRQLKPTEFADVVAATSIFRPGPSAFIPEFIRRRHGEESVIYPDDSIADI
LAPTYGIMIYQEQIMQVAQVFAGFSLGRADLLRRAISKKQGSEFEQLKADFIAGSLEKGH
TTEKATEIYELIERFANYGFNRSHAFGYGALAVQMTYFKAHYPDVFYEIMLRDSKRIALL
NDAQNLGFKLAQPTINRMPYYDKLSKGQIFLGLRAIKSLPRDLALWVIEHREFSGLQDFI
QKLPDNYRKETVIKPLIEIGAFDHFDSNRRKLVENLKKLLEFNSVFQTDLFSETATNLKF
AYVDYEDYSNAEKYQMEFDLMGVAVTEHPLMRLASARQGNFTEVSQLTAGQKATILVQLT
HLKTHRTKNGATMAFLNVTDTKDELDVTMFPESYHHYLADLEVNDFYLITGKVSERNDRL
QLVAEQLVKVVETDKKLWLAILDTTKNVRIAQILREFPGNSPVILYNEATKNTQMTGIYV
DESELLLKRLTGYVDKAVYR
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcccaacttaatacgaaaaccgtttttagcttcatggatgcgacggtcaaactc
accgactacatcactgcagcaaaaacgctcggctaccaaacgcttggcatttcggatgtc
gataatctccatgctgctcatcagttcatcacgcaagccaaagcagcaggcatccaacca
gtcatcggttacgaaacgacacttttgttggacggcctcgccatcaatttcaccttcatc
gccaaaacaaacgccggtctacaaaatctctacagcatttcgagtaaaaaaaacttcggc
tataataacttttcagacattcacagtcatcttggcgatgttgccctgatccttcctgca
gattcagccgtcgacagcatccttacccatttgccccaaaacgatgtgttcgttggtctg
gcgcagccaatggcacaaggctttttgcgaccgaccattccttttttatcggttaggtac
ctaaacgctggggatgcagagacgcttgcgattttacaccacgttaaaaatggcaccaag
tatgatgatagcttgaccagcaaccactttgaaagtttacggttggaaagcgaggttcgt
gctttatttgatcagcagagcctgaagaatttggatcggctggtttcagaaatcagctac
gatatcgcgcttgacacccttgccctaccgcgctttaatcctgaaaaaccagcagtagcc
gaattgcgggaaactgccgaaacctttttgaaggctagcaatttaacttctgcgccttac
cagacgagactggaccatgagctaggtgtgattcatgagatgggcttcgatgattacttc
ttgatcgtcgcagatgtcatacgatatgcgcggtcacaacagatctatacagggatggga
cgtgggtcggccttaggctctctcgtggcctatgccttgcaaatcactggtgtcgatccg
gttgccaataacttactctttgagcgcttcctcaatcccgagcgggccagcctacccgat
attgatatcgacatgccggataatcagcgtgctgagatcctgacctatgtcaaaaatcgt
tacggtagtagtcatgtcgcgcagattatgaccttctcgacctttggcatgaaacagagt
ttccgtgatgttgccaaggtctttggcatgacagaagttgaaatatcgcacgtttcgagc
atgattggccgttcggacaatctcgctcaggaatacgaaaagaataaccgcttccgcgct
gaaatcattaacgattcgcggctacaaaaaatctttgcctatgcgcaaaaaatagaaggc
atgccacgtcagaaatctgtccatgcctcaggtgttgttcttgcggcacatgacttgact
gattatctgcccttagcaccaggcgaaaccctgcctatcacccaatttgaagcccatgac
gttgaagccatcggcctgatcaagtttgactttctgagtatcaaaaacctgactttcatc
aatgacatgcgggatttagttgcgaaaaagcatgaacagcaaatcgacatcagccaaatt
gatctcaatgacgatgcgacgttagaaattttcagaaagggtcagactttggggattttc
cagtttgaaaaccctcagatgatgaattttttgcgccaattaaagccgacagaatttgcg
gatgttgtcgcagcgacctcaattttcagaccaggaccatcagccttcattcctgaattt
atcagacggcgtcatggtgaggagtcggtcatctatccggacgactcgattgcggatatt
ttagcaccgacttatggcatcatgatttaccaagaacagatcatgcaggtcgctcaagtt
tttgccggcttctcactcggtcgggcggatttactgagacgtgccatttctaaaaaacaa
ggcagtgaatttgagcaattaaaagcagatttcatcgcaggtagtttggaaaaagggcac
acaacagaaaaagcgactgagatttatgagctgatcgaacgctttgctaactacggtttt
aaccggtctcacgcctttggttatggtgctctagccgttcagatgacctatttcaaggca
cactatccagatgtcttttatgaaatcatgttgcgggatagtaagcgtatcgctctgctt
aatgatgcgcaaaatctaggctttaaactcgcacaaccaacgattaatcgcatgccctac
tatgataaattatccaagggacagattttcttaggcctgcgggcgattaagagtttgccg
cgcgatttagccctttgggtcattgaacatcgggaattttcaggtctgcaggattttatc
cagaaattaccagacaactatcgtaaggaaacggtgattaaacccttgattgaaattggg
gcctttgatcattttgattctaatcgtcgaaaattagttgaaaatcttaagaaattactg
gagtttaattccgttttccaaacggatctcttttcggaaacggcgacaaatttgaaattt
gcttatgttgactatgaagattacagcaatgctgaaaaatatcagatggagtttgatttg
atgggggtggcagtcacagaacatcctctgatgcggcttgcaagcgcacgccaaggcaat
ttcactgaggttagccagcttacggcggggcaaaaagcaacgattctcgtccaactgacg
catttgaagacgcatcgcaccaagaatggtgcgaccatggctttcttgaatgtgacggat
accaaggatgagctcgatgtgaccatgtttccggaaagctaccaccattatctggctgat
ttggaggtcaatgatttttatttgatcacaggtaaggtttctgagcgaaatgatcgctta
cagttggtggccgagcagcttgtcaaggtggtggaaacggataagaaactttggttggct
atcttagatacgaccaaaaatgtcagaatcgctcagattttaagagaatttccgggtaat
tcaccagtgatcctctataacgaagcgacgaaaaacacgcaaatgacgggcatttacgtg
gatgagtcagagcttttgttgaaacgtttgacgggatatgtggataaggcggtttatcgg
tga
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