KEGG   Pseudolactococcus raffinolactis: CMV25_02305
Entry
CMV25_02305       CDS       T05231                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
lrn  Pseudolactococcus raffinolactis
Pathway
lrn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lrn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CMV25_02305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrn03019]
    CMV25_02305
Messenger RNA biogenesis [BR:lrn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CMV25_02305
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Terminase_6C
Other DBs
NCBI-ProteinID: ATC60792
UniProt: A0A2A5SFT9
LinkDB
Position
475270..476967
AA seq 565 aa
MTTNSYTNLNIKPDEVAVFAIGGLGEIGKNTYGVEYQDEIIIVDAGIKFPEDDLLGVDYV
IPDYSYIVENQDRIKGVFITHGHEDHIGGIPFLLKQANVPIYAGPLSLALIRGKLEEHGL
LRDAKLFEIHPDDEIAFKYLKLSFFRTTHSIPEPIAMVIDTPQGKIVATGDFKFDFTPVG
EPADLHRMAALGEEGVLLLLSDSTNAEIPTFSHSEKVVGASIQKIFERIEGRIIFASFAS
NIFRLQQAVEGAVKTGRKIVVFGRSMEKAIVNGIELGYIKAPKDTFIEPGEVNQYQPHEL
LIMCTGSQGEPMAALSRIANGMHRFVTLQMGDTVVFSSNAIPGNTHGVNQLINRISEAGA
KVIYGKMNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMLKIHAGLAQDTGVPKENC
FIFENGDVLALTADSARPAGHFNAQDTYVDGNGIGDIGNAVLRDRHELSEDGVVLAVATV
DFKSKMILAGPDMLSRGFIYMRESGDLIRSGQRVLFNAIRKAMNDENANEASVARAMTDA
IKPFFYRELEREPIIIPMVLTPDKK
NT seq 1698 nt   +upstreamnt  +downstreamnt
atgactactaatagctacaccaatctaaacatcaaacctgatgaagtcgcggttttcgcc
attggcggactcggtgaaatcggtaagaacacttatggtgtcgaatatcaagatgagatt
atcatcgttgatgccggcatcaaattcccagaagacgatttactcggcgttgactatgtc
attcctgactatagctacatcgttgaaaatcaagaccgcattaaaggtgttttcatcacc
catggtcacgaagaccatatcggtgggattcctttcctcctgaaacaagccaatgtgccc
atttatgctggcccattatccctcgctttaatccgcggaaaacttgaagaacatggcctc
ttgcgtgatgctaaactctttgaaattcatcctgatgatgagattgctttcaaatacttg
aagctttcattcttccgcacgactcactcaattccagagcctatcgccatggtcatcgat
acaccgcaaggtaaaatcgttgccacaggtgacttcaagtttgactttacaccagttggt
gaaccggctgacttgcaccgcatggctgcacttggtgaagaaggcgtgctcctgctcctt
tctgactcaacaaatgctgaaattccaactttctcacattctgaaaaagttgtcggcgct
tctattcaaaaaatctttgagcgcatcgaaggtcggattatcttcgcttcatttgcctca
aatatcttccgtttgcaacaagccgttgagggggccgttaagactggtcgtaagatcgtt
gtcttcggccgttcaatggagaaagccattgttaacgggattgaacttgggtatatcaaa
gcaccaaaagacacctttattgaacctggtgaagtgaaccaataccaaccgcatgaatta
ctcatcatgtgtactggctcacagggtgaaccaatggctgcgctcagtcgtattgccaat
ggcatgcaccgttttgtgaccttgcaaatgggtgacaccgttgtcttttcatctaatgcc
attcctgggaatacacatggtgtgaatcagttgatcaaccggatttctgaagctggtgct
aaagtcatctatggcaagatgaacaacatccatacctcaggtcacggtggtcagcaagaa
caaaaactcatgctccgcttgatcaaacccaaatatttcatgccagtccatggtgagtac
cggatgttgaaaatccatgctggtctcgcccaagatactggtgtgccaaaagaaaactgt
ttcatctttgaaaacggtgatgttctagccttgactgctgattctgcacgtcctgctggg
cacttcaatgcacaagatacttacgttgatggtaatggtatcggagatatcggcaacgct
gtccttcgtgaccgtcatgaattgtcagaagacggcgttgtccttgccgttgcgactgtt
gacttcaagagtaagatgattttagcgggtcctgacatgctcagccgtggcttcatctat
atgcgtgagtccggcgatttaattcgctcaggtcaacgcgtcttgttcaatgccattcgt
aaagctatgaatgatgaaaatgctaatgaagcaagtgtggcacgcgccatgacagatgca
attaaacccttcttctatcgtgagttagagcgcgaaccaatcattattccaatggtctta
acacctgataaaaaataa

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