Pseudolactococcus raffinolactis: CMV25_02305
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Entry
CMV25_02305 CDS
T05231
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lrn
Pseudolactococcus raffinolactis
Pathway
lrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMV25_02305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrn03019
]
CMV25_02305
Messenger RNA biogenesis [BR:
lrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CMV25_02305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Terminase_6C
Motif
Other DBs
NCBI-ProteinID:
ATC60792
UniProt:
A0A2A5SFT9
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Position
475270..476967
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AA seq
565 aa
AA seq
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MTTNSYTNLNIKPDEVAVFAIGGLGEIGKNTYGVEYQDEIIIVDAGIKFPEDDLLGVDYV
IPDYSYIVENQDRIKGVFITHGHEDHIGGIPFLLKQANVPIYAGPLSLALIRGKLEEHGL
LRDAKLFEIHPDDEIAFKYLKLSFFRTTHSIPEPIAMVIDTPQGKIVATGDFKFDFTPVG
EPADLHRMAALGEEGVLLLLSDSTNAEIPTFSHSEKVVGASIQKIFERIEGRIIFASFAS
NIFRLQQAVEGAVKTGRKIVVFGRSMEKAIVNGIELGYIKAPKDTFIEPGEVNQYQPHEL
LIMCTGSQGEPMAALSRIANGMHRFVTLQMGDTVVFSSNAIPGNTHGVNQLINRISEAGA
KVIYGKMNNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMLKIHAGLAQDTGVPKENC
FIFENGDVLALTADSARPAGHFNAQDTYVDGNGIGDIGNAVLRDRHELSEDGVVLAVATV
DFKSKMILAGPDMLSRGFIYMRESGDLIRSGQRVLFNAIRKAMNDENANEASVARAMTDA
IKPFFYRELEREPIIIPMVLTPDKK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgactactaatagctacaccaatctaaacatcaaacctgatgaagtcgcggttttcgcc
attggcggactcggtgaaatcggtaagaacacttatggtgtcgaatatcaagatgagatt
atcatcgttgatgccggcatcaaattcccagaagacgatttactcggcgttgactatgtc
attcctgactatagctacatcgttgaaaatcaagaccgcattaaaggtgttttcatcacc
catggtcacgaagaccatatcggtgggattcctttcctcctgaaacaagccaatgtgccc
atttatgctggcccattatccctcgctttaatccgcggaaaacttgaagaacatggcctc
ttgcgtgatgctaaactctttgaaattcatcctgatgatgagattgctttcaaatacttg
aagctttcattcttccgcacgactcactcaattccagagcctatcgccatggtcatcgat
acaccgcaaggtaaaatcgttgccacaggtgacttcaagtttgactttacaccagttggt
gaaccggctgacttgcaccgcatggctgcacttggtgaagaaggcgtgctcctgctcctt
tctgactcaacaaatgctgaaattccaactttctcacattctgaaaaagttgtcggcgct
tctattcaaaaaatctttgagcgcatcgaaggtcggattatcttcgcttcatttgcctca
aatatcttccgtttgcaacaagccgttgagggggccgttaagactggtcgtaagatcgtt
gtcttcggccgttcaatggagaaagccattgttaacgggattgaacttgggtatatcaaa
gcaccaaaagacacctttattgaacctggtgaagtgaaccaataccaaccgcatgaatta
ctcatcatgtgtactggctcacagggtgaaccaatggctgcgctcagtcgtattgccaat
ggcatgcaccgttttgtgaccttgcaaatgggtgacaccgttgtcttttcatctaatgcc
attcctgggaatacacatggtgtgaatcagttgatcaaccggatttctgaagctggtgct
aaagtcatctatggcaagatgaacaacatccatacctcaggtcacggtggtcagcaagaa
caaaaactcatgctccgcttgatcaaacccaaatatttcatgccagtccatggtgagtac
cggatgttgaaaatccatgctggtctcgcccaagatactggtgtgccaaaagaaaactgt
ttcatctttgaaaacggtgatgttctagccttgactgctgattctgcacgtcctgctggg
cacttcaatgcacaagatacttacgttgatggtaatggtatcggagatatcggcaacgct
gtccttcgtgaccgtcatgaattgtcagaagacggcgttgtccttgccgttgcgactgtt
gacttcaagagtaagatgattttagcgggtcctgacatgctcagccgtggcttcatctat
atgcgtgagtccggcgatttaattcgctcaggtcaacgcgtcttgttcaatgccattcgt
aaagctatgaatgatgaaaatgctaatgaagcaagtgtggcacgcgccatgacagatgca
attaaacccttcttctatcgtgagttagagcgcgaaccaatcattattccaatggtctta
acacctgataaaaaataa
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