Lactococcus raffinolactis: CMV25_04360
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Entry
CMV25_04360 CDS
T05231
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lrn
Lactococcus raffinolactis
Pathway
lrn03030
DNA replication
lrn03430
Mismatch repair
lrn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMV25_04360 (polC)
03430 Mismatch repair
CMV25_04360 (polC)
03440 Homologous recombination
CMV25_04360 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrn03032
]
CMV25_04360 (polC)
03400 DNA repair and recombination proteins [BR:
lrn03400
]
CMV25_04360 (polC)
Enzymes [BR:
lrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CMV25_04360 (polC)
DNA replication proteins [BR:
lrn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CMV25_04360 (polC)
DNA repair and recombination proteins [BR:
lrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CMV25_04360 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
DNA_pol3_a_NI
HHH_6
DNA_pol3_a_NII
tRNA_anti-codon
HHH_3
RNase_H_2
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ATC61159
LinkDB
All DBs
Position
complement(878480..882874)
Genome browser
AA seq
1464 aa
AA seq
DB search
MNDLFEKLMDQLDMPAEIRHNPAFRGNIDKVEVHAISKVWHFYLKFPAILPIDLYRELAY
RLEMAFSNIAKTQVTILTEDGRFDETLLNNYLPLIFDLPGCDTPSFTAIFKKYKFTTADQ
AATAKLLVGDLSNLEYFVKHYFPVMAKHYQDFGFTDLQIIPEVDYQLTDKLVAEYEKKSE
EALADILANQPEAPFQPDNQAPALKEAVASPNQLALGREIKASDTVFQMKDVVTEEANVV
FEGYVFAAEHKVFKNRTTGKESHMLEVKMTDYSSSFIVQKWGRKPEEQVMFDMVKKGMWI
KVKGSVQMDQYKHELVLSARDMVEIKAKNVRKDLMPEDQKRVEFHAHTNMSTMDAIPDVT
DLVAQAARWGHQAIAITDHAGAQSFPHAHSAGKKNGIKIIYGIEANLVEDRVPITYDEDD
SNLSDSTYVVFDVETTGLSAVYNKLIQVAASKMHKGNVIEQFDEFIDPGHPLSEFTTQLT
GITDDMVRGSKPLEQVLKEFQAFCEGSILVAHNATFDVGFMNMNYQRHHLPVIKQPVIDT
LEFARNLYPEFKRHGLGPLTKRFQVSLESHHLANFDAEATGRLLFIFLNDAKEKFGIELL
SDLNTKVVDADSYKRARVKHATIYAKTQDGLKNLFKLISYSNVNYFSGVPRIPKSVLEAH
REGLIIGSACSEGEVFEAVTNKSFDDALKVADYYDFIEIMPPAIYRPLIAKETIKDEVEL
QRILQDLMRIADKLGKPVLATGNVHYLNPEDAIYREIIVRSLGAGAIINRPVGRGEHAMP
APLPEVHFRTTNEMLDDFAFLGEATARQIVIENTQKMADSFDVLTPVRDDLYTPYIPESE
EKMAKLTYEKAHATYGNPLPDIVDLRIEKELNSIIGNGFSVIYLISQILVERSNKRGYLV
GSRGSVGSSFVATMTGITEVNPLPPHYVCPECQYSEFFTEGQYGSGFDMPEKSCPECGHR
LTKDGHDIPFETFLGFKGDKVPDIDLNFSGADQPSAHLDVRDIFGEDYAFRAGTIGTVAE
KTAFGFVKGYERDYGKFYRGAEIERLAAGSTGVKRTTGQHPGGIIVIPGYMDVYDFSPVA
YPAEDINAEWKTTHFDFHAIHDNILKLDILGHDDPTMIRKLQDLSGMDASTIPMDDPDVM
KIFAGTEVLGVTPEQIFSKTGTLGVPEMGTTFVRGMLEETKPSTFAELLQISGLSHGTDV
WLGNAQELIKQGIANLANVIGCRDDIMVYLIHAGLNESMAFTIMERVRKGLWNKIDDEER
ETYIAAMRENNVPEWYIDSCSKIKYMFPKAHAAAYIMMALRVAYFKVHMPIYYYCAWFSI
RANAFDLKVMGDGLDAVKAKMQEIKAKGFEASNVENALFGTLELCNEMLERGFKFGKLDL
YRSEANDFIIEGDTLIPPFSAMDGLGGNVAKQIVAARQEGEFLSKTELRKRAGVSQTLVE
KMDEMGILGNMPEDNQLSLFDDLF
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatttatttgaaaaactcatggatcagctcgacatgcctgcggaaatccgtcat
aatccggcatttcgtggcaatattgataaggttgaagttcatgctatcagtaaagtctgg
catttttatttgaagttcccagcaattttaccgattgacttataccgagaactggcctat
cgcctagagatggccttttcaaatatcgccaaaacgcaagtgacaatcttaacagaagat
ggtcgttttgatgaaaccttgctgaataactacctcccgctcatttttgacttgccaggc
tgtgatacaccaagtttcacggcgattttcaagaagtacaaattcacaacagctgaccag
gctgcaacagcgaaactgctagtcggtgatttgtcaaacctggaatattttgtcaaacat
tattttccagttatggccaaacactatcaagattttggcttcacggatttacagattata
ccagaagttgactatcagttaaccgataaattggtcgctgagtatgaaaaaaaatctgag
gaagcgctagcggatattttagctaaccaaccagaagcccccttccagcctgataatcaa
gcacctgctttaaaagaagcggtcgcatcccctaaccaactcgcactgggcagggaaatc
aaggcgtctgataccgtgttccaaatgaaggatgtcgtgactgaggaggcgaatgtcgtc
tttgaaggctacgtttttgcggcggagcataaggtctttaagaatcgcacgactggtaag
gaaagtcacatgctggaagtcaagatgacggactacagcagctcttttatcgtccaaaaa
tgggggcgtaaacctgaggagcaggtcatgtttgatatggtcaaaaaaggcatgtggatc
aaggttaagggcagtgttcagatggatcagtacaagcatgagttggtgctaagtgcgcgt
gatatggtcgaaatcaaggcaaaaaacgttcgcaaggatctcatgcctgaggatcaaaag
cgggtcgagttccatgctcataccaacatgtcgaccatggatgctatccctgatgtgacg
gatctcgttgcccaagccgcacgctggggacatcaagctatcgcgatcactgatcacgcg
ggggcgcaaagttttccgcacgcccattctgccggtaagaaaaatgggatcaagattatt
tatgggatagaagctaacctagtcgaagatagggtgccgatcacttatgatgaagatgat
agcaatctgtcagattcgacctacgttgtttttgacgtggagacgaccggcctttctgcc
gtatataacaaactgattcaagtcgcagcatctaaaatgcacaagggaaatgtcatcgaa
cagttcgatgagtttatcgatccgggtcatcccttgagtgagtttacaacacagttgaca
gggattacagatgatatggtcagagggtctaaacccctagagcaagttttaaaagaattc
caagccttttgtgagggcagtattcttgtcgcccataatgcgacctttgacgttggcttc
atgaatatgaattatcagcgccatcatttgcctgtgattaaacagccagtcattgatacc
ttggagtttgcccgtaacctgtatccagaattcaagcgacatggcttggggcctttgact
aagcgtttccaggtttcccttgaaagccatcacttggccaactttgatgcggaagcgacg
gggcgtttgctctttatcttcttaaatgatgccaaggagaaatttggcattgagctacta
agcgatttgaataccaaggtcgtggacgcggattcctacaagcgcgcgcgggtcaagcat
gcgacaatttatgctaaaacccaagatggtctgaaaaacctctttaaactcatctcctac
tcaaacgttaattacttttcaggcgtgcctagaattccaaaatcagtccttgaagcacat
cgtgagggattgattatcgggtcggcttgttcagaaggtgaagtttttgaggcggttacc
aataaatcctttgatgatgcgttgaaagtcgctgattattatgactttatcgagatcatg
ccaccagccatctatcgccctttgattgccaaagaaacaatcaaagacgaagtggagctc
caacggattttgcaagacttgatgcggattgcggataaactgggcaaaccagtcctagcg
acaggaaatgtccactatctcaatccagaagatgccatctaccgtgaaatcatcgtccgt
tccctaggtgccggcgccatcatcaaccgtcctgtcggtcgcggtgaacacgccatgcct
gcaccattaccagaagtccatttccgcacgaccaatgaaatgctggacgattttgccttt
ttaggagaagcgacggcgcgtcaaattgtcattgaaaatacacagaaaatggcggattct
tttgatgtcttgacgccagttcgtgacgacctctatacgccctatattcctgaatctgag
gaaaaaatggccaagctgacctacgaaaaagcgcatgccacctacggcaatcctttgcct
gatatcgtcgatttgcggattgaaaaagagctcaattcgattattggtaacggcttctcc
gtcatctatctcatttcccaaattctcgttgagcgctctaacaaacggggctatctcgtt
ggctcgcgggggtctgtcggctcctcatttgtcgcgaccatgaccggtattaccgaggtt
aatccactgccaccccattatgtctgcccagagtgccagtactctgagttctttaccgag
gggcaatatggctcaggatttgatatgccggagaaaagctgtccagaatgtggacacagg
ctcacaaaagatggccacgatattccatttgaaactttccttggtttcaagggggataaa
gtacccgatatcgacttgaacttttctggtgctgaccaaccgagcgcccatttggacgtc
cgagatatctttggagaagactatgcctttcgtgccggaaccattggtacggtggctgag
aagacagcctttggttttgttaaaggctacgaacgtgactacggtaaattctaccgtggc
gctgaaatcgagcgtcttgcggcaggcagtacaggtgttaaacgaacgacaggtcagcat
ccgggtggtattatcgttattccaggttatatggatgtttatgatttcagtcctgtggcc
tatccagctgaggatatcaatgccgagtggaaaacgacccactttgatttccatgccatc
catgataatatcctcaaactcgatattctgggccatgatgatccgaccatgattcgtaaa
ttacaggatttatccggcatggatgcctcaactattccgatggatgatccagatgtcatg
aaaatttttgcgggaacagaagttctgggtgtcacgcctgagcagattttttctaagacg
ggcacgctaggtgtacccgaaatgggaacaacattcgttcgcggcatgttagaggaaaca
aagcctagcacttttgcagaattactccaaatttccggtctctcccatgggacggacgtt
tggctggggaatgcgcaggagttgatcaagcaaggtatcgccaatctagccaatgtaatt
ggttgtcgagatgacatcatggtttacttgattcatgcggggctcaatgagtcaatggcc
tttacaattatggaacgtgtacgtaagggactttggaataagattgatgatgaagagcgt
gagacttatatcgctgccatgcgtgaaaataatgtgccggagtggtatatcgattcatgt
agtaaaatcaaatatatgttccccaaagcccatgcggctgcctatattatgatggccttg
cgtgtcgcctacttcaaggtgcacatgccgatttactattactgtgcctggttctcgatt
cgtgctaatgcttttgaccttaaagttatgggtgatggcttagatgctgtgaaagccaaa
atgcaagaaatcaaggccaagggctttgaagctagtaatgttgaaaatgccctctttggg
acgctagaactatgtaatgaaatgttagagcgcggttttaaatttggcaaacttgatctt
tatcggagcgaagccaatgacttcattattgaaggtgacacattgatcccgccattttca
gctatggatggtcttggtggcaatgtggccaagcaaattgttgcggccagacaagaagga
gagttcctcagtaaaactgaacttagaaaacgggctggtgtctctcaaaccctggtagaa
aaaatggatgagatgggcattcttggcaatatgcctgaggataatcagttgagtttgttc
gacgatttgttttaa
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