Pseudolactococcus raffinolactis: CMV25_05100
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Entry
CMV25_05100 CDS
T05231
Symbol
addA
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lrn
Pseudolactococcus raffinolactis
Brite
KEGG Orthology (KO) [BR:
lrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrn03400
]
CMV25_05100 (addA)
Enzymes [BR:
lrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMV25_05100 (addA)
DNA repair and recombination proteins [BR:
lrn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CMV25_05100 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ATC61299
LinkDB
All DBs
Position
1030904..1034557
Genome browser
AA seq
1217 aa
AA seq
DB search
MQQLSDQEIDLLQQAEIGKEMPKTPEQIEAIYRTGTNILVSASAGSGKTFVMTERIINLI
LNGVSLKNLFISTFTNKAAAELKLRLDKKIRETRAHERSFEEIHLLTTALQDLSTADIGT
MDSFTLKFLKENFYLKNLDPTFRLLVDSTEQEVIKRDIFDQLVEEHLADQGIISQERFIQ
VMNNFSSDRKIDAFYSVLNKINTFADSLENPIDWLENDFLNGFSTYQSFTDLPDTFTNGL
QESLQEIYRALLENLSSGVITGPAKINNTEEFLANFEYLYDCLGQKQFQKFAEFYRQMKF
QFVPNANNKDNRDEVLEAQKLSLKTLITTNKARLDQFIEAIKHQDIIEKYHQPASALTHD
LQVIALAFYQRYHDYKLKNACLEYADVTHLTIEILQENEVLRKVYQTQYFEVMVDEYQDT
NHLQEAMLRLLSNGKNSFMVGDVKQSIYGFRLADPSLFMSKYEAYQQPDADGKLIRLKEN
FRSYPEVINFTNQIFEHLMDKKIGEMVYGPEEKLVVGNPKLAQETSPDLTAELLIYKDEK
SVSSETDDAVSTDELVVTAQAIRQLLSKGTQPKDIVILVRSKTNNAEIERVLQSFDIPVV
LDEGKMNYLQAMEVLVMLDVLRAIDNPLFDVSFVALLKSPLFDFSENDLAIISLQASNDV
NFYDKYQKARCQNGLKADLIDTTLSVKLQHFENTFSKWCQLAHQESLHSLIWEIYRDTHY
YDYVGGMKNGQLRQANLAALADRAATYESSGYKGLFQFIKMIDNFMDSKNDLAAVNIALP
SDAVRVMTIHKSKGLEFPYVFILNVNKKFNTKDLSSDLILSRKNGAGISFLADFKKEIDT
EFPYAIVKMTTLPQMANALEKEYQALAEEMRMLYVAFTRAVKKIYMVGKVDASKLDEDNQ
FIAYQTAAFNVNGILDDTLRQSSQGYLNWVLGVYQATTVKKSSGLKVRVVEDDDLKDMVP
VDQKNQLSFETLIAESKQYDDAMATIEEVKLAKQILDSADKLNDKYAAGINLPTIQTPSQ
IKKRYEHLISEQDVVVSNHQKYSQFEFLKIDKKVSPTELGSAVHELMQSLDFSNVTRETL
SQTIESLTVRDEVKQKIKVDQILSLFDTDFGQMMVTHHKSMTREAPFSMLKTDQASGEQY
VIRGIIDGFIKLADKIILFDYKTDHFTNLEAIPEIKARYQMQMSLYAESLTTAFKQEKIE
QYLILLGGPDKVYIEQL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaactcagtgatcaagaaatcgacttgttacagcaagctgaaattggcaaagaa
atgccgaaaacacctgagcaaatagaggccatttatcgcactggtactaatattttagta
tccgcatctgctggttctggaaaaacatttgtgatgactgaacggattattaacctcata
ttgaatggtgtatcactcaaaaatttgttcatttcaacctttaccaataaagcggcggct
gaattaaaactgcgattggataaaaaaattagagaaacacgtgctcatgaaagatccttt
gaagaaattcatcttttgacaactgctttacaggacttgtcaactgctgatatcgggaca
atggatagttttacactcaaatttctgaaagaaaatttttatctcaaaaatctagatcca
acttttagattattagtagatagcacagagcaagaagtcatcaaacgagatatttttgat
cagctggtagaagagcatttagctgatcaagggattatcagtcaagaaagatttattcaa
gtgatgaataatttttcaagcgaccgtaaaattgatgccttctattcggtattgaataaa
attaatacttttgcagatagtttagaaaatccgattgattggttagaaaatgattttttg
aatggtttttcaacctatcaaagctttactgacttaccggatacatttacaaatggttta
caggaaagtttacaagaaatatatcgagcacttcttgaaaatttgtcttctggtgtgatt
acaggcccagctaaaataaataatactgaagaatttttagctaattttgagtatttatat
gattgcttaggtcaaaaacaatttcaaaagtttgctgaattttatcgtcagatgaaattt
cagtttgtaccgaatgccaataataaagataaccgtgatgaagtacttgaagcccaaaag
ctgagtttaaaaacactaatcacgacgaataaggcacgtcttgatcaatttatagaggcc
attaagcatcaagacataattgaaaagtatcatcaaccagctagtgcattgacacatgat
ttacaggtgattgccttagcattttatcagcgttatcatgactataagctcaaaaatgcc
tgtctagaatatgctgatgtgacccatttaacgattgagattttgcaggaaaatgaggtt
ctgcgtaaagtttaccagacgcaatattttgaagtgatggttgatgagtaccaggatacc
aaccatctgcaagaggcgatgttgcggctcttatcaaatggtaaaaactcttttatggtc
ggagatgtcaagcaatctatctatggttttcgattagcggatccttctctttttatgagt
aaatatgaggcttaccagcaacctgacgccgatggcaaactaattagactgaaggaaaat
ttccgttcatatccagaagtcattaattttaccaatcagatttttgagcatttgatggat
aaaaagattggtgagatggtctatggtccagaagaaaagttagttgtcggtaatccaaag
ttagcgcaagagacttcccctgatttgacagctgagcttttgatttataaggatgaaaaa
agtgttagctctgaaacagacgatgctgtgtctactgatgagctagttgtgacggcacaa
gccattcgtcaactgctgagtaaaggtacgcagccaaaagatattgtcattttagtcaga
agtaaaacaaataatgcagaaatcgaacgcgttttgcaatcctttgatatcccagtagtg
ttggacgaaggtaaaatgaactacttgcaggcaatggaagttttggttatgttggacgtg
ttaagagcgattgacaatcccttgtttgatgtatcatttgtcgcccttctcaaatcacca
ttatttgattttagtgaaaatgatttagcgattatcagtttacaagcttcaaatgatgtc
aatttctatgacaagtatcaaaaagcccgatgtcaaaatggtttgaaagcagacttgatt
gatactactttatctgtcaaacttcagcattttgaaaatacatttagcaagtggtgtcaa
cttgctcatcaagaaagtttacacagtttgatctgggaaatctatcgggatacccattat
tatgactatgttggtggcatgaaaaatggccaactccgtcaagctaatctggcagcttta
gcagatcgtgctgctacttatgagtcatccggttataaaggtttatttcaatttatcaaa
atgatcgacaattttatggatagtaaaaatgatttagctgctgtcaacattgctttacca
agcgatgctgttcgtgtcatgactattcataaatcaaaaggccttgaatttccctacgtc
ttcattttgaatgtcaataaaaaattcaatacaaaagatttatcgagcgatttaattcta
tccagaaaaaatggtgcagggattagtttcctagctgatttcaaaaaagaaatcgatacg
gaatttccttatgccatagtcaagatgaccaccttaccgcagatggcaaacgctctagaa
aaagagtatcaagcattagctgaggagatgcggatgctttatgttgcctttacacgtgct
gtcaagaagatttacatggtggggaaggttgatgcctcaaaactagatgaagacaatcaa
ttcatcgcttatcaaacggctgcttttaatgtaaatggtatcttagatgacactcttaga
caatccagtcaaggctatcttaactgggtgttaggtgtttatcaggcgacgactgttaaa
aaatcatctggactcaaggttcgcgtggttgaggatgatgatttaaaagatatggtgcct
gtcgatcaaaaaaatcaactatcttttgaaaccttaatagccgaatccaagcagtatgat
gatgccatggcaacaattgaagaggttaaattagccaagcaaattctggattctgctgat
aaattaaacgataaatatgcggcaggcatcaatttaccaacgattcaaacaccgagtcag
atcaagaaacgttatgaacatttgatttcagagcaggatgtcgttgtcagcaatcatcaa
aagtattctcaatttgaatttttaaaaatagataaaaaagtatcaccgactgaattggga
tctgctgtacatgaattaatgcagtcacttgatttttcaaatgttacacgtgaaacatta
agccagactattgaaagtcttactgttcgagatgaggtcaaacaaaaaatcaaagttgat
caaattttaagtttatttgatacagattttggtcaaatgatggtgacccatcacaagtcg
atgacacgtgaagcccctttttcgatgctaaaaacggatcaggcatcaggtgagcaatat
gtgattcgaggaattattgatggtttcatcaagttagctgataaaatcatcctgtttgat
tataagacagaccactttacaaatttagaagccattcctgagattaaagcacgttatcag
atgcaaatgtcgctctatgcagaaagtctaacaactgcctttaagcaggagaaaattgag
cagtacttgattttactaggtggaccagacaaggtttatattgaacaactataa
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