Pseudolactococcus raffinolactis: CMV25_06500
Help
Entry
CMV25_06500 CDS
T05231
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lrn
Pseudolactococcus raffinolactis
Pathway
lrn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CMV25_06500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrn03400
]
CMV25_06500
Enzymes [BR:
lrn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CMV25_06500
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CMV25_06500
DNA repair and recombination proteins [BR:
lrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CMV25_06500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_IS1595
Zn_Tnp_IS91
Zn_ribbon_TFIIB
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ATC61536
LinkDB
All DBs
Position
1297660..1298493
Genome browser
AA seq
277 aa
AA seq
DB search
MPELPEVETVRRGLNKLVRGQKITALRINYTRMIKSDLTTFKTDLINQTIQEVNRRGKYL
LFELGEQTLVSHLRMEGKWLSYPSTDIPDNKHFHCFFDLSNGQTLVYQDVRKFGTLELVK
TCELSDFFNRKKIGPEPIEADFDLKRFKHQLSGSQKKIKPYLLDQSLVAGLGNIYVDEVL
WLAKIHPSEIARYLSPHKVAELRRAVIHILAEGVKYGGSTIRSYKNALGLDGTMQDHLQV
YGKTGQPCARCGGAIEKFKLSGRGTHFCPKCQKLKKI
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagtagaaaccgtcagacgcggccttaataaacttgttcgtggt
caaaaaatcacggcacttcgaattaactatactcgaatgatcaagtctgatttgacgact
ttcaaaaccgatctaatcaatcaaaccattcaagaagtcaatcgccgcggcaagtatttg
ctgtttgagctaggcgagcaaaccctagtcagtcatctgcgtatggaagggaaatggctg
agttatcccagcaccgacatcccagataataaacatttccactgctttttcgacctatca
aacggccaaaccctcgtctatcaagacgtccgaaagttcggcacgctagagctcgtcaaa
acatgcgaactcagtgatttctttaaccgcaaaaaaattggaccagaaccaatagaggcg
gattttgatttaaagaggtttaagcatcagctctcaggcagtcagaaaaagatcaaacct
tacttattggatcagtctttggtggccggtctgggcaacatctatgttgatgaggtattg
tggctggccaagattcatccgtctgaaatcgcaagatacttatcaccccacaaagtagca
gagcttagacgtgctgtcatccatatcttagcagaaggcgttaagtacggggggtcaacc
attcgtagctataaaaatgcgctgggtcttgatgggaccatgcaggatcacttgcaagta
tatgggaaaacagggcagccgtgtgcgcgatgtggcggggcgattgagaaatttaagctg
tcgggtcgagggacgcatttttgtcccaagtgtcaaaaattgaaaaaaatttga
DBGET
integrated database retrieval system
