Pseudolactococcus raffinolactis: CMV25_07285
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Entry
CMV25_07285 CDS
T05231
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lrn
Pseudolactococcus raffinolactis
Pathway
lrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMV25_07285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrn03019
]
CMV25_07285
03009 Ribosome biogenesis [BR:
lrn03009
]
CMV25_07285
Enzymes [BR:
lrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CMV25_07285
Messenger RNA biogenesis [BR:
lrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMV25_07285
Ribosome biogenesis [BR:
lrn03009
]
Prokaryotic type
rRNA helicases
CMV25_07285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Motif
Other DBs
NCBI-ProteinID:
ATC61687
UniProt:
A0A290Q032
LinkDB
All DBs
Position
1457217..1458776
Genome browser
AA seq
519 aa
AA seq
DB search
MKFTELGLSEDILSAIVKAGYETPTPIQEQTIMLALDGKDVIGQAQTGTGKTAAFGLPTL
NKIDVNGGLQAIVIAPTRELAVQSQEELFRFGRDKGIKVRSVFGGASIDKQIKALKSGAH
VVVGTPGRMVDLIKRRALQLGDIETLILDEADEMLNMGFIDDLEFIIKATPAERQTLLFS
ATMPDAIKKIGVKFMKEPQHVKIVSKEMTSDLIDQYYVKTKEFEKFDVLTRLIDVQKPEL
AIVFGRTKRRVDEITRGLKLLGYRAEGIHGDLAQQKRLAVLRDFKNDNLDVLVATDVAAR
GLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGLSITFVSNNEMGYLRAIERLTKKE
MKGMKPPTREEAYQASLAVAFDEIKRDLTDPKISAKLDKFDQDAENLLAEYDAKLLVSLL
LQAKVNDPDTRPKVEIAAEKPLPFNGEGGKGGGRGGNRGGGRGRNDRRGGGGYNRDKRGG
GRDRDDRNKKDYYKKDKQKVHPKATEKKPGFVIRNKGDK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaactcggattgtcagaagacatcctatcagccatcgttaaagctggc
tacgaaacaccaacaccgattcaagaacaaacaatcatgctcgcccttgatggcaaagac
gtgattggtcaagcccaaacaggtactggtaaaacagctgcttttggtctaccaaccttg
aacaaaatcgacgttaacggtggtttacaagcaattgttattgcaccgacacgtgaatta
gcagtacaatcgcaagaagaacttttccgcttcggtcgcgataaaggcatcaaagtccgt
tcagtctttggtggtgcaagcatcgacaagcaaatcaaagcacttaaatctggtgcacat
gttgttgtcggcacaccaggtcgtatggttgacttgatcaaacgtcgtgccttgcaactt
ggcgacatcgaaacattgatccttgatgaagcagacgaaatgttgaacatgggcttcatc
gatgaccttgagtttatcatcaaagcaacacctgctgagcgccaaactctcttgttctca
gcaacaatgcctgacgccatcaagaaaatcggcgtgaaattcatgaaagaaccacaacac
gtcaaaatcgtttcgaaagaaatgacgtctgacctaatcgatcaatactatgttaaaaca
aaagaattcgagaaattcgatgtcttgacacgtttgattgatgtgcaaaaacctgaattg
gcaatcgtctttggtcggactaaacgtcgtgttgacgaaatcacacgtggtttgaaatta
ctcggctatcgtgctgaaggtatccatggcgacttggctcaacaaaaacgtttggctgtc
ttgcgcgatttcaaaaatgataaccttgacgttttagtcgcaactgacgttgcagcacgt
ggtttggatatctctggcgtaactcatgtttataactacgatatcacacaagaccaagaa
tcatatgttcaccgtatcggccgtactggtcgtgctggtaaatctggtttgtcaatcact
ttcgtgtctaacaacgaaatgggctacttacgtgccattgagcgtttgactaagaaagaa
atgaaaggcatgaagccaccaacacgcgaagaagcttaccaagctagcctcgctgttgct
ttcgacgaaatcaaacgtgatttgactgatccaaaaatctcagctaaattagataaattt
gatcaagatgctgaaaacttacttgctgaatacgatgcgaaacttttagtttcactcttg
ttgcaagccaaagttaatgatcctgatacacgtcctaaagtagaaatcgctgctgaaaaa
ccactaccatttaacggtgaaggtggtaaaggcggcggccgtggcggcaatcgtggcggt
ggccgcggacgtaacgatcgtcgtggtggcggtggttataaccgtgacaaacgtggtggt
ggtcgcgaccgtgatgatcgcaacaaaaaagattactacaaaaaagataaacaaaaagtt
caccctaaagcgactgaaaagaaacctggtttcgtgattcgtaataaaggcgacaaataa
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