Labeo rohita (rohu): 127152788
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Entry
127152788 CDS
T09007
Symbol
trpc6a
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 6a
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
127152788 (trpc6a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127152788 (trpc6a)
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
127152788 (trpc6a)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Sigma_reg_N
Motif
Other DBs
NCBI-GeneID:
127152788
NCBI-ProteinID:
XP_050949593
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Position
21:16205254..16215327
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AA seq
875 aa
AA seq
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MNQRRPVLEDRNQSKYHTIEKRNRSKDNLLMNEDFGDDCYGSYGYYHGENLARQALPKSR
RQAVRGAAYMFNAHPNSLTPVEERFLDAAEYGNIPVVRRMLEEIPELDVNCVDYMGQNAL
QLAVANEHLEVTELLLNKDNLSRIGDALLLAISKGYTRIVEAILSHKAFADSKRLTASPS
QAPMHDDXFFAYDEDGTRFSHDITPIILASHCHEYEIVHILLGKGARIEQPHDYFCTCDT
CNYHQKYDSFSHSRSRINAYRGLASPAYLSLSNEDPVLAALELSNELASLANIEKEFKNE
YRKLSMQCKDFVVGLLDLCRSTEEVEAILNGEEDETLDVPGRPSLIRLKLAITYELKKFV
AHPNCQQQLLSIWYENLPGLRQQSTAIKLLVVLGVAIGLPFLAMVYWVAPCSKMGKIMRG
PFLKFVAHAASFTIFLGLLVMNAADRFDGTKLLPNMTIHDYPTQLFRMKTTPFTWMEMLI
ISWVIGMIWAECKEIWSQGPRDYLVEPWNLLDFGMLAIFVASFISRIMAFWHACAAQRYV
DEHYTDLTNVTLPFEVGYFQLARIDWLPSDPQLVSEGLYAIAVVLSFSRIAYILPANESF
GPLQISLGRTVKDIFKFMVIFILVFLAFMIGMFNLYSYYRGAKQNEAFTTVEESFKTLFW
AIFGLSEVRSVVVNNGHKFIENIGYVLYGVYNVTVVIVLLNMLIAMINNSFQEIEDDADV
EWKFARAKLWFTYFEEGRTLPVPFNLVPSPKSVLGLVMGAKGLLKELSNRHKAIMKGSEL
SELGQNKTCQDKTPPSLSRYQKIMKRLVKRYIIKAQIDKECDEVNEGELKEIKQDISSLR
YELLEEKSHNMEELANLVRTLEKNFSQDSLTLKSH
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaagaagacctgttctggaggatagaaatcaatcaaagtatcacacaattgaa
aagagaaacagaagtaaagacaatctactgatgaatgaagattttggcgacgactgttat
ggcagttatgggtactaccatggtgagaacctggcccgacaggcgttacccaagagcaga
aggcaggcggttcgaggggcagcctacatgttcaatgcccaccccaacagcctaacccct
gtagaggaacgtttccttgatgccgccgagtatggaaacatacctgtggtgcgccgaatg
cttgaggagatacctgagctggatgttaactgtgtggactacatgggccagaatgcattg
cagttggcggtggcaaacgagcacttagaagtaacagagctcctgttaaataaagacaac
ctgtcgcgtattggtgatgcacttttgctggccatcagcaaaggctacaccaggattgtc
gaggccattttgagtcacaaagctttcgccgactccaagagactcacagcgagccctagt
caggctccaatgcatgatgacnntttttttgcgtatgacgaggatggcacgcggttttct
catgacatcactccgatcattctagcatctcattgtcacgaatacgaaatcgtgcacatt
cttctaggaaagggtgctcgaattgagcagccacatgactacttttgtacctgcgacacc
tgcaattaccatcaaaaatacgattctttcagccactcccgctcgcgtatcaatgcttac
aggggattggccagtccagcgtacctctctctgtccaatgaggatcctgtgttggcggct
ctggagctcagcaatgaactcgcgtctttggccaatattgaaaaagaatttaagaatgaa
tataggaaactttctatgcaatgcaaagactttgtcgtggggcttctggacctgtgtcgg
agcacagaggaagttgaagccattttgaatggtgaagaggatgagactttagacgtgccc
ggacgaccaagtctcattcgtttaaaactcgcaataacgtatgaactgaaaaagtttgtg
gcccaccctaactgtcaacaacagctcttatcaatatggtacgaaaacctgcctggactc
aggcagcagtccaccgccattaagttgctagtggttttaggtgttgcaattggacttccc
tttctagcaatggtgtattgggtggcaccctgcagcaagatgggaaagatcatgcgtggg
cctttccttaagtttgtggcacacgcagcctccttcactattttccttggccttttggta
atgaacgctgcagaccgctttgatgggacaaagctgctcccaaatatgaccattcatgac
tatccaacgcagctgtttcgtatgaaaacaactccctttacgtggatggaaatgctcatc
atttcctgggtcatagggatgatttgggcagagtgcaaggagatctggtctcaaggtcca
agagattatctggttgagccttggaatttgctagactttggaatgttggccatttttgtg
gcgtccttcatctcaaggataatggctttctggcacgcatgtgcagcccaacgctatgtt
gatgagcactacactgatttaaccaatgtaactctgcctttcgaggtgggatacttccag
ctggctcggatcgactggctcccgtctgatcctcagttagtttctgagggcttgtacgcc
attgcagtggtcctgagcttttctcgaattgcgtacatcctgccagcgaatgagagcttt
ggaccactgcagatatctttgggacgaactgtgaaggacatcttcaagttcatggttatc
ttcatcctagtctttttggccttcatgattggaatgttcaacctctactcatattatcgg
ggtgctaaacagaacgaagctttcacaactgtagaggaaagcttcaaaacattgttttgg
gcaatatttggcctttctgaggtcagatcagtagtcgtgaacaatggacacaagttcatc
gaaaacattggatatgttctctatggagtttacaatgtcacagtggtcatcgtccttctc
aacatgctcattgctatgatcaacaattcctttcaggagattgaggatgacgcagatgtg
gagtggaagtttgcccgggccaagctttggtttacttactttgaggagggccggactctc
cctgtgccttttaacttggttcccagtcccaaatctgttctgggactggttatgggggct
aaaggtcttttgaaggagctttccaacagacataaagccattatgaaggggtctgagctc
agtgagttgggacagaacaaaacttgccaggacaaaactcctcctagcctcagtcgatat
cagaaaattatgaagcgtcttgttaagcgatacatcatcaaagctcaaattgacaaagaa
tgtgatgaagtcaatgaaggtgaactgaaagagattaagcaggacatttcaagccttcgc
tatgagctgctggaggaaaagtcacacaacatggaagagctggcaaacctagtgaggaca
cttgaaaaaaatttctctcaggacagcttgacactcaagtctcattaa
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