Labeo rohita (rohu): 127152831
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Entry
127152831 CDS
T09007
Name
(RefSeq) short transient receptor potential channel 5
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127152831
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127152831
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127152831
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
127152831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
Ank_5
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
127152831
NCBI-ProteinID:
XP_050949644
LinkDB
All DBs
Position
21:5122691..5179570
Genome browser
AA seq
1023 aa
AA seq
DB search
MNPMAQLYYNKASNSPYRDRIPLQIVRAEVELSAKERAYLTAVEKGDYAGVKQALEEAEI
YYNINVNCLDPLGRSALLIAIENENLEVMELLLSHGVHMGDALLYAIRKEVVGAVELLLS
YKKPSGEKQVPSHMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKTLASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKLFAKDLLDQARSSCELETILNHRDDHSEELDPRECRDLAKLKVAIKYH
QKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFIIGLLFPAFSLIYLLAPKSTLG
TFIKKPFIKFICHTASYLTFLFLLLLASQHIVQTDLHVQGPPPTIVEWMILPWVLGFIWA
EIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKMVAYFKYNSSRPRVEWEMWHPTLI
AEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQ
LYFYYETKASEEPNHCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFT
EFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTL
PPPFNIVPSPKSVWYLCVWLHCRLCGHGEPRHEDECKHENLKEFTERHADNLIQNQHYQE
VIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRKPPRRTYSSSS
EATQQDETAEPEEDDDGDEEGDRFGEPGESSRSKASTSFSQCYRRTRESQFSVSALFKSM
SGSARERPESNGLRNNISHSSAFVRTSSRLQRFSRSKKNSLQRLGMLMSRMNGHIPDQNV
ETTGNQQSAYSISDQVPQSSWHGPQMLSKVTQSEMHLHTLGLGAPGTEQNPTQATSQRAN
GRDSLLLRPPSHSLPPLHCASSLTTSSAQLLASSDDLCHGWVGPCDSLGSSSWEQEESVT
TQL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccatggcgcagctgtactacaacaaggccagtaactccccgtaccgcgatcgc
atcccgctgcagatcgtgagggcggaggttgagctgtctgccaaggaacgagcctacctg
acagcggtggagaagggcgactatgcaggagttaaacaggcccttgaggaggccgagatc
tattacaacatcaacgtgaactgcctcgacccattgggccgcagcgcactcctcatcgct
attgagaatgagaacctagaggtgatggagctgttgttgagccatggcgtgcacatggga
gacgcactcctctacgccatccgcaaggaggtggtgggagcggtggagttactgctgtcc
tacaagaagccaagtggggagaaacaggttccttctcacatgatggacacacagttttca
gagtttacacccgatatcacaccaatcatgttggctgctcacacgaacaactacgagata
attaagctcctagttcaacggaaagtcaccatcccccggccacaccagatccgctgcgac
tgcgtggaatgtgtctctagctccgaagtggacagtctgcggcactcccgttcacgtcta
aacatctacaaaactctggccagcccctctctcatcgccctttccagcgaagatcccatc
ctcactgcgttcaggctgggctgggagctgaaggagctcagtaaggtggagaacgagttc
cggcaggagtatgaggagctgtcacagcagtgcaaactttttgctaaagacttgctagat
caggcccgcagctcctgtgagctggagaccatcctcaaccaccgggatgaccacagcgag
gaactggacccccgtgagtgcagagacctggccaagctcaaggtagccatcaagtaccac
cagaaagagtttgtagctcagcccaactgccagcagctcctggcaacactgtggtacgac
gggttcccaggttggagacgacgtcactgggcagtgaagcttgtcacttgcttcatcatt
ggcctgctgttccctgccttctccctcatataccttctggctccaaagagcaccctggga
accttcatcaagaaacctttcatcaaattcatctgccacactgcctcctacctgaccttc
ctcttcctcctcctcctcgcctcgcagcatattgtgcaaactgatctgcatgtacaggga
cctccgcccaccatcgtggagtggatgatcttaccctgggttctaggcttcatctgggcg
gagattaaagagatgtgggatggcggtttcacagagtacattcatgactggtggaacctg
atggattttgcgatgaactccctctacctggccactatatctcttaaaatggtggcctac
tttaagtacaacagctctcgtccccgtgtggagtgggagatgtggcaccctacgcttatc
gccgaggctctcttcgccatcgccaacatcttcagctctctgcgtctcatctctctgttt
accgccaactctcacttgggtccactgcagatttctctcggccgcatgctgctggacatc
ctcaagtttcttttcatctactgtctggtgctgctggccttcgccaatggtctcaaccag
ctctacttttactatgagacgaaggcgtctgaagagcccaaccactgcaaaggaatccgt
tgtgagaagcagaacaatgccttctctacgctgtttgaaactctccagtctctcttctgg
tctgtgtttgggctgctgaatctgtacgttaccaacgtgaaggctcgtcatgagtttaca
gagtttgtgggggccactatgtttggcacttacaatgtcatctcactggtggtgctgctg
aacatgctcattgctatgatgaacaactcctaccaactcattgctgatcatgcggacatc
gagtggaaatttgctcgtaccaagctgtggatgagctactttgatgagggcgggacgtta
ccgccacccttcaacatcgtacctagtccaaagtctgtgtggtacctgtgtgtgtggttg
cactgccgtctgtgcggacatggagagccgagacacgaggacgagtgtaaacacgaaaac
ctcaaagagttcacggaaaggcatgctgataacctcattcagaaccagcactaccaggag
gtgatcagaaacttggtaaagcgatatgttgcagccatgatccgcagcgccaaaacagac
gaagggctgacagaggagaacttcaaggaacttaagcaggacatctccagcttccgctac
gaggttcttgacctgctgggcaaccgtaaaccaccgcgccgcacatactcctctagtagc
gaggccactcagcaggacgaaacagctgagcctgaggaagacgatgacggcgacgaggag
ggcgataggttcggagaacctggagaatcgtccagatccaaagcatctacgtccttctcc
caatgttacaggagaacccgagagtcccagtttagcgtatcggctctcttcaagtccatg
tcgggatcagcaagagaaagaccagaaagcaatggcttgagaaacaacatatcccactcg
tctgcgtttgtgcggaccagcagccgcctacagcgcttttcgcgctccaagaaaaactct
ttgcagcgtttgggaatgctaatgtctcgtatgaacggacacatcccggaccaaaatgtg
gagaccacaggaaatcagcagtccgcatacagcatctcagaccaagtaccgcagtcgtct
tggcatggtccccagatgctgtcaaaggtaacacagagcgagatgcacctgcacacattg
ggactgggagcacctgggactgaacagaacccaacgcaggccacatctcaaagggccaac
ggcagggacagtctcctcctccggccacccagtcactcgctgcccccgctgcactgtgct
tccagcctgaccacctccagcgcccagctcttggcctctagtgatgatctgtgccatggc
tgggtgggaccctgtgacagtttgggctcctccagctgggaacaagaggagtcggttacg
acacagctgtaa
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integrated database retrieval system
