Labeo rohita (rohu): 127156733
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Entry
127156733 CDS
T09007
Symbol
tdg.1
Name
(RefSeq) thymine DNA glycosylase, tandem duplicate 1 isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
127156733 (tdg.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127156733 (tdg.1)
Enzymes [BR:
lroh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
127156733 (tdg.1)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
127156733 (tdg.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
INO80_Ies4
Motif
Other DBs
NCBI-GeneID:
127156733
NCBI-ProteinID:
XP_050955716
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Position
25:complement(14088273..14095328)
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AA seq
435 aa
AA seq
DB search
MDERLYGSLPHAPSEYLQQWVQSAQQHLQALQAQYPHMANGNAGFMMEGPREDGGMQQMP
VHPEDVAQMDPAAVQKAPAKKRGRAANKEPKPKGEPRAKPGPKPKKAKEDKDAPPAEGQE
KIDETFKKVKRKVDRFKGMSEEEVMKKTLPDILTPNLDYVIIGINPGLMAAYIGRWFPGP
GNHFWKCLFLSGFTEKLLNHMDDDSLPEKYGIGFTNMVARATPGSKDLSSKELREGGKIL
VEKIKKFKPLIAVFNGKCIYEMFCREIFGKKPKTLEFGLQPHKIPDSETALYLMPSSSAR
CAQFPRAQDKVHFYIKLRELRDELKGVAKPKEIEEVNYTFDLGMAKEDAKRMAIKEEHYD
PGYEAAFGGAYGEPAPEGGQSNGYCNFSASEETAEKAPTNPNAVGQVQDGQWMTQSFADQ
IPDIGNSSQAQTWGV
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaggctctatggatctttgcctcatgccccctcggaatacctccaacaatgg
gttcagtcagcacagcagcatctgcaggcccttcaggctcagtatcctcacatggctaat
ggcaatgctggctttatgatggagggacccagagaagatggaggcatgcagcagatgcct
gtacacccagaggacgtcgcccaaatggaccctgcagctgtacagaaagctcctgctaaa
aagcgaggaagggcagcaaacaaagaacctaaacccaaaggtgaacctcgagccaagccg
ggacccaaacccaagaaagctaaggaggataaggatgccccgccagctgaaggacaggag
aagattgatgaaacctttaagaaagtcaagaggaaagtcgatcgctttaagggcatgtcg
gaggaggaagtcatgaagaaaacactgcctgatattcttacccccaatctggactatgtc
attatcggaattaatccagggttgatggcggcctacattggaagatggttccctggacca
ggaaaccatttttggaagtgtctattcctgtctggattcacagagaagctgctaaatcac
atggatgatgatagtttgcctgagaaatacggcatcggcttcacaaatatggtagcgaga
gcgacaccaggaagtaaagatctctctagcaaagaacttagagaaggcggtaaaatctta
gtggaaaagataaagaaattcaagccactcatagcagtttttaacggaaaatgtatatat
gaaatgttctgtagggagatatttgggaagaaacccaaaacgcttgaatttggcctacag
cctcacaagattcctgactcggagacggcgttgtacctgatgccgtcctccagcgcccgc
tgtgctcagtttcctcgtgctcaggacaaagtgcatttttacatcaagctgagagagctc
cgagacgagctgaagggtgttgcgaagcccaaggagattgaagaagttaactacacattc
gatcttggcatggccaaagaggacgctaagaggatggccatcaaggaagagcactacgat
cctggttatgaggcagcgttcggaggagcttatggagaaccggcacccgaaggaggccaa
agcaatggatattgtaacttctccgcatctgaggaaacagctgagaaggcaccgacgaat
ccaaacgcggttggacaggttcaggacggtcagtggatgacgcagtctttcgccgatcag
atcccagacatcggcaactcttctcaagcccaaacctggggtgtatga
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