Labeo rohita (rohu): 127163359
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Entry
127163359 CDS
T09007
Symbol
eftud2
Name
(RefSeq) LOW QUALITY PROTEIN: 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127163359 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127163359 (eftud2)
Spliceosome [BR:
lroh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127163359 (eftud2)
Complex C
U5 SnRNP specific factors
127163359 (eftud2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
127163359
NCBI-ProteinID:
XP_050962514
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All DBs
Position
3:24775876..24790397
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AA seq
972 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEEVDADDREADEADEEEDDEDQADADEEEGGGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKMKRFTLMEQELPATVYDMEFLA
DLMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVG
IKSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSAVRLSDGIVLFIDAAEGVMLNTE
RLIKHAVQEKLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDESLIV
SPLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYMEFAKRLWGDIYFNPKTRKFTKKA
PNSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVC
NRFFGEFTGFVDMCVQHIPSPQGGARAKIEHSYTGGLDSDLGETMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYSLEDEEDSQICTVGRLWISVARYQIE
VNRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DEPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctttatgatgagttcggaaactatattggaccagagctggactctgat
gaagatgaggaagtagatgcagatgaccgagaggctgatgaggctgatgaggaggaggat
gatgaagaccaggctgatgctgatgaggaggaggggggtggtatggaggtggttctgcat
gaggataaaaagtattatcccacagctgaggaagtttatggtcctgaggtggaaactatc
gtccaagaagaagatacacaaccattgacagagcccatcataaaacctgtgaagatgaag
cggtttactctgatggagcaagagcttccagccacagtctatgacatggagttccttgct
gatttgatggacagctctgaattgatcagaaatgtcaccttgtgtggacacttacaccac
ggcaagacatgctttgtagattgcctcattgaacagacacatcctgaaatccgcaagaga
gatgacatggatttgcgatacacagatatcctcttcacagagcaggagagaggagttggc
atcaagagtacaccagtaaccatggtgctgcctgactctcggggcaaatcctacctcttc
aacatcatggacacgccaggtcatgtgaatttctctgatgaggtgacatcagcagtcaga
ctgtctgacggcattgtgctttttatcgacgctgctgagggggtgatgctaaacaccgag
cgactgatcaagcatgcagtgcaggagaagctggccatcactatctgtattaataaagtg
gatcgtctgattgtggagctcaagcttcctcctactgatgcctactacaaactgcgccac
attgtggatgaggtcaacggcttgctgagcacatactccaccgatgagtctctgattgtg
tctcccctcttgggaaacgtgtgtttcgcttcctcacaatacagcatctgcttcactctc
ggctcctttgccaaaatctattcagacacctatggtgacatcaactacatggagtttgct
aaaagactgtggggagacatttacttcaaccccaaaacgaggaaattcacaaagaaagcc
cccaacagcaactctcagcgcagctttgttgagttcgtattggagccactgtacaagatt
ctttcacaggtggtgggtgatgtggatacgtctctgccccgtgtcttggatgagctcggc
attcatctgactaaagaggagttgaagctcaacatcagacctctgctgcgccttgtctgt
aaccgtttctttggagagtttacaggctttgtggacatgtgcgtacaacacataccatct
ccgcaggggggtgccagagccaagatagagcacagctacacgggtggactagactcagac
ctcggggagacaatgtctgagtgtgaccctgatggtccactgatgtgccacaccactaag
atgtacagcacagatgacggcgtgcagttccacgcatttggtcgagttctgagcggaacc
ctgcaggcgggacagccggtgaaggttctgggagagaactacagcctggaggatgaggag
gactcacagatttgcactgtcggacgcctgtggatttctgttgctaggtatcagattgaa
gtgaatcgagtccctgctggtaactgggtgttgattgaagggtgcgaccagcctattgtt
aaaacggccacaatcacagagccccgtggaaatgaagaggcacagatcttcaggccattg
aagtttaacacagcgtcagtgataaaaatcgctgtggagccggtcaatccctcagaactg
cctaagatgttggatggactcagaaaagttaacaagagttatccatcacttacaacaaag
gtggaggagtcaggtgaacatgtgattcttggtacaggtgagctgtacctggactgtgta
atgcacgacctgcggaagatgtactctgagatcgatatcaaggtagctgatccagtggtg
accttctgtgagactgtggtagagacgtcctccctcaagtgttttgctgaaacgcccaat
aaaaagaataagattactatgattgctgagccattggagaagggactagctgaagacatt
gagaacgaggtggtgcagatcacatggaacagaaaaaagttgggagaatttttccagaca
aagtatgactgggatttgctagcagctcgttccatttgggcttttggacctgacacaact
gggcccaacattttagtagacgacactttgccctctgaggtagacaaagctcttctcggc
tcagtgaaggacagcattgtacaaggcttccagtgggggacacgcgagggtcctttatgt
gatgaaccaatccgcaacgtgaagtttaagatcctagacgcagtgatcgcacaggagcca
ctgcatagaggaggaggacaggtcatccctacagctcgcagagtcgtctactctgccttc
ctgatggccacgcctaggttgatggagccctattactttgtggaggttcaggcccctgct
gactgcgtttctgctgtgtacactgtgttggcacgcaggagaggtcatgtgacgcaggat
gcgccaatccctggctctcctctctacaccatcaaggctttcattccagctattgactcg
tttggctttgaaactgatctccgcacacacacgcagggccaagccttcgcgctcagtgtg
ttccaccactggcagattgttcctggtgatcctctggataagagcattgtgattcgtcct
ttagagcctcagccggcccctcatctggccagagagttcatgatcaaaacccgcaggcgc
aaaggcttgagcgaggacgtcagtatcagcaagttcttcgatgaccctatgttgttggag
ctggccaaacaagatgtggtgctcaactacccgatgtga
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