Labeo rohita (rohu): 127165041
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Entry
127165041 CDS
T09007
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04010
MAPK signaling pathway
lroh04137
Mitophagy - animal
lroh04141
Protein processing in endoplasmic reticulum
lroh04210
Apoptosis
lroh04217
Necroptosis
lroh04621
NOD-like receptor signaling pathway
lroh04622
RIG-I-like receptor signaling pathway
lroh04920
Adipocytokine signaling pathway
lroh05132
Salmonella infection
lroh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127165041 (traf2b)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127165041 (traf2b)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127165041 (traf2b)
09143 Cell growth and death
04210 Apoptosis
127165041 (traf2b)
04217 Necroptosis
127165041 (traf2b)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127165041 (traf2b)
04622 RIG-I-like receptor signaling pathway
127165041 (traf2b)
09152 Endocrine system
04920 Adipocytokine signaling pathway
127165041 (traf2b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127165041 (traf2b)
09171 Infectious disease: bacterial
05132 Salmonella infection
127165041 (traf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127165041 (traf2b)
04121 Ubiquitin system [BR:
lroh04121
]
127165041 (traf2b)
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127165041 (traf2b)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127165041 (traf2b)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
127165041 (traf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
zf-RING_4
zf-C3HC4_2
ADIP
zf-RING_5
zf-C3HC4_4
Paramyxo_NS_C
zf-RING_UBOX
TMF_DNA_bd
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
127165041
NCBI-ProteinID:
XP_050965252
LinkDB
All DBs
Position
5:7811744..7831659
Genome browser
AA seq
559 aa
AA seq
DB search
MFYSVYFTKDILWICLKIKCDTKMITTADPVGKWKAMARPSLPSSLDSTLPGISREVLSV
SMEPKYQCQQCKEILRKPFQAQCGHRFCVFCFKQLTSSGPIPCEACRAEGIFEEATSILN
IAVAFPDNAARREIDSLPAKCPNDGCSWSGTLKEYEGQHEGRCDFERVKCEACQGLILVS
EKDRHNERECEARTLNCKYCKVTFNFKEIKAHDEICQKFPMQCKDCGKKKIPREKFQEHI
KSCAKSKSACQFSEIGCRAVVDNGKQQEHEQTSVMEHLRLMLGVLSSVRLRAEGGGEWQE
DSGLGLYRGPEDAPPAGAHAAAHNAGRGGGPGVQQKVTALENIVCVLNREVERSALTLEA
LSRQHRLDQEKIENLSNKVRQLERTLTMRDLQLSESEQSLRELQFCTYDGVFIWKIADFS
RRRQDAVGGRAPAMFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMRGKYDALL
KWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRPISEMNIASGCPLFCPLAKLAGKS
SYLRDDTIFIKAIVDLTGL
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgttctacagtgtgtacttcacgaaggacatcctttggatctgtctgaaaataaagtgc
gacacgaagatgatcaccactgctgaccctgtgggtaaatggaaggcaatggcacgtcca
tctttaccatcctcattggactccacattacctgggatatctcgagaagtgctgtctgtg
tccatggaaccaaaatatcagtgtcagcagtgcaaagagattcttaggaaacctttccaa
gcacagtgcggacatcgattctgtgtgttctgtttcaaacaactcaccagctcagggccc
ataccctgcgaagcctgtcgtgctgagggtatatttgaagaggcaacatctatactcaat
attgcagtggcatttcctgataatgcagcacgaagagaaattgatagcttgcctgccaaa
tgcccaaatgatggatgtagttggtctggaacactaaaagagtatgagggccaacatgaa
ggtcgttgtgactttgaacgtgtaaaatgtgaagcatgtcaaggactcatcttggtcagt
gagaaagatcgccacaatgagcgggaatgtgaggccagaaccctgaactgcaaatattgc
aaggtcacattcaactttaaagaaattaaggcccatgatgaaatttgtcagaaatttccc
atgcaatgtaaagactgtggtaaaaagaaaatccccagagagaagtttcaagagcacatc
aaatcctgtgcaaagtccaagtcggcgtgccagttcagtgagattggctgcagggcagtg
gtcgacaatggtaagcagcaggaacatgagcagaccagtgtgatggaacatttgcgtctc
atgctgggtgtgctgtcctctgtgcgcctgcgggctgaggggggtggagagtggcaggaa
gattccggactgggattgtatcgtggacccgaagacgcacctccagcgggggctcatgct
gctgcccataatgcaggaagaggaggtggtcctggtgtgcagcagaaagtcacagcattg
gagaacatagtgtgtgtgttgaacagggaggtagagcgctcggccctcaccttggaggca
ctatcccgtcaacatcggctagaccaggaaaagatagagaacttgtcaaacaaggtacga
cagctggaacgaactttaaccatgcgagatctgcagttatcagaatctgagcagtccttg
cgggagctgcagttttgtacatatgatggagttttcatttggaaaatagcagacttctct
cgtcgcagacaagacgcagtggggggccgggcacctgctatgttctcacctgcattttac
tccagtaaatatgggtataagatgtgcctgagactctacctgaatggtgacggcacgggt
cgtggcactcacctgtctctgttctttgtggttatgagggggaaatatgatgcactgctt
aagtggccctttagccagaaggtgacattgatgctgttggaccagaacaacagagagcac
atcattgatgccttcaggcctgacgtgagctccacatccttccagagacccatcagtgaa
atgaacatagccagcggttgtcctctcttctgccccctcgccaagctggcaggcaaaagc
tcgtatctgagagatgacaccatattcattaaagccatagtcgacctcaccggcttataa
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integrated database retrieval system
