Labeo rohita (rohu): 127166047 Help Entry 127166047         CDS       T09007                                  Name (RefSeq) TNF receptor-associated factor 2   KO K03173   TNF receptor-associated factor 2 [EC:2.3.2.27] Organism lroh  Labeo rohita (rohu) Pathway lroh04010   MAPK signaling pathway lroh04137   Mitophagy - animal lroh04141   Protein processing in endoplasmic reticulum lroh04210   Apoptosis lroh04217   Necroptosis lroh04621   NOD-like receptor signaling pathway lroh04622   RIG-I-like receptor signaling pathway lroh04920   Adipocytokine signaling pathway lroh05132   Salmonella infection lroh05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:lroh00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     127166047  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     127166047  09140 Cellular Processes   09141 Transport and catabolism    04137 Mitophagy - animal     127166047   09143 Cell growth and death    04210 Apoptosis     127166047    04217 Necroptosis     127166047  09150 Organismal Systems   09151 Immune system    04621 NOD-like receptor signaling pathway     127166047    04622 RIG-I-like receptor signaling pathway     127166047   09152 Endocrine system    04920 Adipocytokine signaling pathway     127166047  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     127166047   09171 Infectious disease: bacterial    05132 Salmonella infection     127166047  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:lroh03019]     127166047    04121 Ubiquitin system [BR:lroh04121]     127166047 Enzymes [BR:lroh01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      127166047 Messenger RNA biogenesis [BR:lroh03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Stress granule specific factors      127166047 Ubiquitin system [BR:lroh04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     127166047 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_2 zf-RING_6 ATG16 zf-C3HC4_4 Sina_ZnF Motif Other DBs NCBI-GeneID:  127166047 NCBI-ProteinID:  XP_050967075 LinkDB All DBs Position 5:complement(43114026..43127133) Genome browser AA seq 593 aa AA seqDB search MAAQEPSPPSSMENNKPGFPKKILANKLEDKHLCNCCQNILRRPFQAQCGHRFCSYCFNR TVGSGPQKCNACIKEDIFEEPTSILKQGCAFPDNAARREVENLPAVCFNEGCSWKGSIKD YESSHEGKCEFMILPCPLCKELIRLNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRYHVVGCDMSVEKEKIHDHERACA HEHLNLLLHYIMGMKVSLEGLQPQSLELAGHKAHELHQALRDLEARVSQLSAIPGPTGPP VQGVPSSSSSASSSSASAATPPPPPPAAATLPTSFTPLPSSVGAALELQLHSEKTKVADL GRRCQELEVKAGTFEDVVCVLNREVERFATTMEASNRQHRLDQDKIEALSNKVRQLERQV GVKDLTVAEMEGRLREMSATTFDGVFIWRISDFTKKRQDAIAGRAPAMFSPAFYTSKYGY KMCLRIYLNGDGTGRGTHLSLFFVVMRGMSDALLKWPFNQKVTLMLLDQSNREHIIDAFR PDITSSSFQRPVSEMNIASGCPLFCPLSKLEGKNSYIRDDTIFIKAIVDLTGL NT seq 1782 nt NT seq  +upstreamnt  +downstreamnt atggctgctcaagaaccctctcccccgtcctccatggagaacaacaagccagggttccca aagaagattctggccaacaaacttgaagacaaacatttatgcaactgctgtcagaacatt ttgagaagaccgttccaagcgcagtgcggccatcgcttttgttcttactgcttcaaccgg actgttggatctggacctcagaaatgtaatgcctgtatcaaggaggacatctttgaagag cccacgtcaatccttaagcaaggctgtgcgtttcccgacaatgctgccagaagagaagtt gaaaatcttccagctgtgtgcttcaatgaaggctgttcctggaaaggcagtattaaagat tatgagtcgagccatgaggggaagtgtgagttcatgattctgccgtgtcccttgtgcaaa gagctcattagattgaacgaacaggagcgtcataatgaacgcgagtgtccggagagaacg ctcaactgcaaatactgtaaagaaccatttcacttcaaaaacatcaaggctcatgatgaa atctgtcccaaatatcctatgatctgtgaaggatgtgcgaagaagaaaatcccaagggaa aagtatgttgaccacattaagttctgcagcaaattcaggacgccatgcagatatcatgtg gttggctgtgacatgtcagtggagaaggaaaagatccacgatcacgagcgtgcctgtgct cacgaacatctcaacctgctgctgcactacatcatgggtatgaaggtcagtctggagggc ctgcagccccaaagtctggagctggccggccacaaagcacacgagcttcaccaggcactc cgagacctggaggccagagtcagtcagctgagcgccatccccggcccgaccggacctccc gtgcagggggtcccctcctcttcatcctccgcctcgtcctcctccgcatccgccgccaca ccgccgcctcctcctccggccgccgccaccctgcccacgtccttcactcctctgcccagc tcggtgggcgcagcgctggagctccagctccacagcgagaagaccaaggtggcagatctg ggccgccgctgccaggagctggaggttaaagcggggacatttgaggatgtggtctgtgtg ctaaaccgagaagtggagcgcttcgcaaccaccatggaggccagcaaccggcagcacaga ctcgatcaggacaaaatcgaggctcttagtaacaaggttcgtcagctggagcggcaggtg ggcgttaaagacctgactgtggctgaaatggagggcagattgcgggagatgtctgccacc acgtttgacggcgtcttcatctggcggatatcagatttcactaagaagagacaagatgcc attgctggacgggcgcctgccatgttttcacctgcattttacacaagcaagtacggctat aagatgtgcctgcggatttacctgaacggggacgggacgggtcgtggaacgcacctctcg ctgttttttgtggtgatgagaggaatgagtgacgcactgctcaaatggcccttcaaccag aaggtgacactgatgctgctggatcagagtaacagagagcacatcatcgatgcgttccgt cccgacatcacttcctcctcattccagcggcctgtaagtgaaatgaacatcgccagcggc tgcccgctcttctgtccactgtccaagctggagggcaagaactcatacatacgtgacgac accatcttcatcaaagccatcgtggacctcactggcctttag

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