Labeo rohita (rohu): 127177397
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Entry
127177397 CDS
T09007
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1 homolog
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127177397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127177397
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lroh04054
]
127177397
Membrane trafficking [BR:
lroh04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
127177397
Pattern recognition receptors [BR:
lroh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127177397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
FIIND
UPA-FIIND
NLRC4_HD2
CARD
NOD2_WH
AAA_16
AAA_25
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127177397
NCBI-ProteinID:
XP_050985629
LinkDB
All DBs
Position
2:32061703..32068362
Genome browser
AA seq
1192 aa
AA seq
DB search
MKIYEREQSNIVHQYKSSVTDRSKFVTEYNLPSDKLVDLARYTEPVIIQRSIEQTKKYYR
EHVRSVDALSHLLSIDKNHSIRIDQLFSPDCDGNKPKTVILSGDSGRGKSFMLQKIMLDW
ASGELYSENFDAVFLLKFQKLKYISEEMSLFELLSWSCSLTSDQISQILELTPQKVLILI
DGIDEYVSHPPIRLHTNPSKRAPPMLILRNLLRRFLLPESFVLVTTRFVATDHLMNLLKG
PQRFTEIEGFSERGVQEYFQKFFQDEKLFRKTFESVKANESLLTACSVPLLCWMVCFCLK
KHFTDDDHVMRELKTTTSIYVHFVSTLLEHHDQSQSVLTMLRSLGQLAEEGMKKQQILFD
EKSVAKTGLNPASTLFLYKDDLRGKEKTVYKFIHFRFQEFFTALSYVLLDEEVSWWKVSE
LFNLMYSEAVMYRSSPILRGRLSNPICSVVMFLCGLLNEKVSSSIFQKIKWTHTMKLKKR
EVKKKLMKRISAMTWQCGFELFALHCLYELQDERFVREALKTHRFMYLSNVSLRSTDCWV
LLYCLQCCPHIRDLNLMYCDLTAEKLKILQPALCMCENMRLSVEHLSEVGDLIQILCEGK
ILRELIVQEDENSAESPRWSLNLSVTHEDVLLTLSSSEKNPSFPAVLNISFRCPQSEISS
TDWTLFLQRLSKTGELAGNTSAFNQHTSLLLASFKSVGLKTLDLKLVSLNESWASGIISL
VQTCTSLQQLSVSVTGLLLEDGLMLLKKSLTDPHCTVIIEGWKCSKSADQCKEQDWSHSC
NEKVEIQFKPKILEKLEELNITEPEPSEMNLCCQSCVHIVDSDQWVQVEPSVCTDEGGSA
FRISTPAGRFECSRTRMRWVCAGDVTLQYRAVDGHFLSAELERLQCERIGPVIDVTVISG
KLEEAHLPHYACLAESDPSLTDAVKLLTKRDEGIYLQSVELTRHHAKIVQPSFSLTTLII
NWIMQWEEHCNLLLYMRCKDPLILHIYFFPVNDTYSKEKVEQNEKSSLLISHPRPNRPFR
LKTPHLLDVPGASVHPVEGISFRTDIDPNFFKVKQHQRDDVKMNLIREEDKKSVWKATIW
KEEFAPVNPGQIQEVPHLCSEFDKAQFFEKHSLALIKRVKNVKSIADKLREQRIIHDELY
SEITQTNLTSQNSMRKICYSVHSSGVIAKGKFIVILQEEEPHLFEELVHSDS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatatatgaaagagagcagagcaacatagttcatcagtacaagtcttcagtcact
gacaggtctaagtttgtgacagagtataatcttccatctgataaacttgtggatctggcc
agatatactgaaccagtgatcattcaaaggagcatagagcaaactaagaaatactatcgt
gaacatgtgaggtctgtggatgctttatctcatctgttatcaattgacaagaatcacagc
atcagaatagaccagctgtttagtcccgactgtgatggaaacaaaccgaaaactgtgatt
ctcagtggagattctggaagagggaaatccttcatgttacagaagatcatgttggactgg
gcatctggagaactttactctgaaaactttgatgcagtttttcttctgaagtttcaaaag
ctaaagtatatttctgaggagatgagcttatttgagctcttgagctggagttgcagctta
acatcagatcagatctcacagatactggagttaacaccacagaaagtcctcatcctcatt
gatggtattgatgagtatgtatcacatccacccattcgtttgcacactaatccatccaag
agagcaccacctatgctcattcttaggaacttgttgaggagattcttgctgcctgagtca
ttcgtgcttgtcaccacaagatttgtagctactgatcacctgatgaatctcctcaagggt
cctcagcgtttcactgagattgagggcttctctgagagaggggtgcaggagtacttccag
aagttttttcaggatgagaagctcttcaggaaaacatttgagagtgtgaaggcaaatgaa
agcctcctgactgcctgctctgtgcctttgctgtgttggatggtctgtttttgtctgaag
aaacactttacagatgatgatcatgtgatgagagaactgaagacaaccacctccatatat
gtgcactttgtgtccactctactggagcatcatgaccagagtcagtctgtcctcaccatg
ctgaggagtctgggtcagctggcagaggaagggatgaagaagcagcagatcctatttgat
gaaaagagtgtagccaagacaggcttaaatccagctagtaccttgttcttgtataaagat
gatcttagaggaaaagaaaaaacagtttataagtttatccatttcagatttcaggagttc
ttcactgcgctttcttatgtcttgctggatgaagaagtgtcctggtggaaagtcagtgag
ctgtttaacttgatgtattcagaagctgtaatgtacaggtcatctcctattttgagaggt
agactatcaaatcccatctgttcagttgtgatgtttctctgtggtctcttaaatgagaag
gtgagcagctcaatctttcaaaagatcaagtggactcacaccatgaaactgaaaaaaagg
gaagtaaagaaaaagctgatgaaaaggatttctgcaatgacatggcagtgtggatttgag
ttatttgctctccactgtctgtatgagctccaagatgagagatttgtcagggaagctctg
aaaacacacaggttcatgtatctgtctaacgtttccctgaggagcacagactgttgggtg
ctgctgtactgtcttcagtgctgtccacacatcagagacctgaacctcatgtactgtgat
ttaacagctgagaaactcaagattcttcagccagcgctctgtatgtgtgagaatatgagg
ttatcagtggagcacctgtcagaagttggagatttgatccagattctttgtgaaggaaaa
atcttaagagagctgatagttcaggaagatgagaacagtgctgagagtcctagatggtca
cttaacttgtcagtcactcatgaagatgtcttgttgactttgagctcctcagaaaagaat
ccatcatttccagcagtcttaaacatcagttttagatgtccacaatcagagatatccagc
actgactggacacttttcttgcagagactcagcaagacaggagaattggcaggaaatact
tcagcttttaatcagcataccagtttgttgctggcttcatttaaatctgtgggtttaaag
acgttggatctgaagctggtcagtctgaatgagagctgggcttctgggatcatttccctt
gtccagacctgcaccagtctacagcagctcagtgtcagtgtcactggattgcttttggag
gatggactcatgttgctgaagaaatcactgactgatccacactgcactgtgatcattgaa
gggtggaagtgcagtaaatctgctgaccagtgcaaagaacaggactggagtcacagctgt
aatgagaaagtggagattcaattcaaaccaaagattttagaaaagctggaagaactgaac
atcactgagccggaaccatctgaaatgaatctgtgctgtcagtcttgtgttcacattgtt
gattctgatcagtgggttcaggtggagccatcagtctgtacagatgaaggagggtcagca
ttcaggatcagcactccggcgggtcgattcgagtgcagcaggaccagaatgcgatgggtc
tgtgctggtgacgtcactctccagtaccgtgcagtggatggacatttcctcagtgcagag
ctggagaggcttcagtgtgagcgaattggtcctgtgattgatgtgacagtgatctcaggg
aaactggaggaggcccatctgcctcattacgcctgtttagcagagtcagacccctctctc
acagatgctgtgaagctcctcaccaaaagagatgaaggaatatatttacaatctgtggag
ttgacccgtcatcatgccaaaatagtccaaccgtccttctctcttacaactctaattata
aactggatcatgcaatgggaagaacactgtaatcttcttctctacatgcggtgtaaagat
cctctcattcttcacatctacttttttccagtaaatgacacttattcaaaagaaaaagtt
gagcagaatgaaaaatcaagtcttttgattagtcatcccagacctaacagaccatttcgg
ttgaaaacacctcaccttcttgacgttcctggtgcatctgtccatcctgtagaggggatt
tcatttagaacagatattgatccaaacttcttcaaggttaagcaacatcagcgtgatgat
gtaaaaatgaatcttatcagagaggaagacaagaagtctgtgtggaaggccacaatatgg
aaagaagaatttgccccagtaaatccagggcaaattcaagaagtgccgcatctgtgttct
gagtttgataaagctcagttctttgagaaacacagtttggctctcattaaaagggttaaa
aatgtgaagagcattgcagataaactgcgagagcagagaataattcatgatgaactatat
tctgaaatcacacaaactaatttgaccagtcagaatagtatgagaaagatctgttactca
gttcattcaagtggtgtaatcgcaaaaggtaaattcattgtaattcttcaggaagaagag
ccccatctctttgaagaactggtgcattcagattcttaa
DBGET
integrated database retrieval system
