Labeo rohita (rohu): 127178611
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Entry
127178611 CDS
T09007
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore membrane glycoprotein 210-like
KO
K14314
nuclear pore complex protein Nup210
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127178611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127178611
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127178611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_NUP210_7th
Ig_NUP210_15th
Ig_NUP210_2nd
Ig_NUP210_1st
Ig_NUP210_3rd
Ig_NUP210_9th
Ig_NUP210_6th
Ig_NUP210_4th
Big_2
NUP210_Ig
Phage_T4_gp36
VirB3
Motif
Other DBs
NCBI-GeneID:
127178611
NCBI-ProteinID:
XP_050987544
LinkDB
All DBs
Position
16:complement(19947306..19993898)
Genome browser
AA seq
1885 aa
AA seq
DB search
MSSLITLSKSTKLNVPKLLLPLSTHVPVNITLTAQRGCYKWVSSKPETVRVYPLSTLSPP
ALLPLSSCSQQCLVSALSSPQAVPLRTVVQAQDPVTGHILRCDVIINRIERIQIVTTVRQ
LFTDDPPLQLSVRAFDSEGNTFSCLAGLKFNWRLVKESDAIQAVRFVRHHDAGYAPPPHI
LSLESAGQWGESVLLYGIHSGSALIKVYFQHPEFEHVEAASVTLFVIDRLHLSPAGDTYL
LQGSTIRYTLWKTEQEGETEVTLSEEGYSLVVDGYKGIISFQQETATVTALEPGHATLSV
THNNLPSEITSQLLRTSVYVVKPSYMTFSIKEEEDRWVLETGRQYYLTVRIHDDKGHVVH
LSQNVVIVVEETEGLVTLESLSDPTCHLLQTIMKGKTLIQASLYSIVSENGNYWPVIPPI
RVRQEMEIYNPLTLQPPVIVFPWQPHNKLYQHNIQVEGGSGFVSWEVSDREIATVTVKGV
VTAGTARGQAEIQVSDSKNALHKVVGKVMVVRPARLQLIPQRGDCRVGDRIEIPIALWGI
QDSSNTCSQTNYVFNTHSDTHRSISASSQENVFSDTHSLQCGESLLEDRNLVLVTDCSQL
SLHVHSEPAGIFAHMSGSPSPGPGFCGGVRMEAVSQGHAVVTITVETEGCSISETTTLVA
YSPLKSLVSEVLLSVGSSRVVMFEGGPRPWPPAPFRFFSDVEVQPERGVTVEALRTIEAG
PPRHAYRVTCTAMGEQWLVFRCGNTPGPLNEIPAVEESRVQVVCGVPASLSLSLLSSPSS
PSSIPVFSHHYSCTQPHFPCGLLSVSKMRDATLQLSVLDRKGVQFDNFTSCSVNWTSSDP
GLLSLCPQSTMKDRLTQTGYKLHAWQVLQAHRQTGIVTVNVTLRCPEMLTAPVSQCVNLR
LVDDVQWARHSVTLFNHPKVTENLSLIHGSGHFQIHLQDNQLASINHVENGNIIQVSPLQ
SGSSVLLAHDLCLTSDPAVASLLVSDIKDFRIDFINTIEVRHSAVVQVHVLDSKNQPFLH
HYLLLMNLMLIPSSSIISVENVGSVDKYSVGFSVTGLKVGVVSFHLSAVDGHGCVISSSH
KNMQVYSPFILQPCKLTLAVGSVRQVKWEGGPQPQYAVKFSVSDSSIAVVTETGLVRGLT
VGVVKLRGALQTQNTEAFLTFLQDEVEVEVFNLTAVRIQAPLVTLSIGTEMPVYVMGSDS
SQNPLSLGSVEVGLSFHWSLSKAGVLEIKPRHARVGVSVSPSHSFSVLVRARAPGRTSLK
VRVRLQQIDTSNTSLSDHLTDEIQILVFEEMQLTAGSSGSILMSPLSQYPLQSNKDSVHY
TLSRCVSGKGLVTLDDQGVLRTGPDTGLAILEVYAMDVCGINQTLLISVEVSTVWFVRTL
SVSSVNSDSEKALPAFPLGWSVRFRTLYYDNMGQQFHSHNVQTMITANRDDLVQLIVDKD
SQSFLVQTASPGLTVLRVQGDTTNPFLSDYTPLFVMPAISEPPGFLRSGDVICFSSPITD
QQGQRGRWDVSSNKILQINSETGVAFAKNFGTVVVYYKLEGGQQTFREVTVEPASIPVLI
LPADRLLTNWPEASEYTVRVDLNTSAVSTAQCNLDQWEAIENELHPEAELLCSLNFGAPY
PEMRVLQAIFHASPFYDANTAQYSCRISVQPQSDSILHLLSTLPLSIHLSACLRTQSTPA
ALSLPQSPPSFQSSLQLPYVPAFHCPVTKIKLSSQQPVAEITVFGTTNMLSTLRVQSDTP
DIVLSDPVRSDEDPTLILISVYSTSHFLDQVPSAASITLYTDLSPQKHVVMVTRVMDNPE
SGHLGVYSNSGHFFISIFALFAVLASTAALFIVYNSMLSLTRTVPAVLTPSANTDEDKQH
FYLWLTPSMPKPQVLQRKQWLWSTK
NT seq
5658 nt
NT seq
+upstream
nt +downstream
nt
atgagctcattgattacactcagtaagtcgactaaactgaacgttcccaaactgctgtta
cctctcagcactcatgtgcctgtgaacatcacactgacagcacagagaggatgctacaaa
tgggtgtcctctaagcctgagactgtcagggtgtatccgctctccacactcagccctccg
gctctgctgcccctctcctcttgcagtcagcagtgcttggtgtcagctctgtcctccccc
caggctgtccctctccgtactgtggtccaggcacaagaccctgtgacaggtcacattctg
cgctgtgatgtcatcattaatcgcattgaaaggattcagattgtcacaaccgttcgacag
ctttttaccgacgaccctcctctgcagttgtcagtccgggcgtttgactcagaaggaaat
acttttagctgtctggctggcttgaaatttaattggcggctggtaaaggagtctgatgca
atacaggcagtgaggtttgtgcgtcaccatgatgcagggtatgctcccccacctcatatc
ctgtctctagagagtgctggtcagtggggggagagtgtccttctttatgggattcacagt
ggctcagcacttataaaagtgtattttcaacaccctgaatttgagcatgtagaagcagct
agtgtgactttatttgtgatagacagactgcacctgagtccagctggagacacatacctg
ctacagggatccaccatcagatacactctttggaaaacagaacaagaaggagagactgag
gtcaccttgtcggaggagggatacagtctggttgtggacggatacaagggcatcatctct
tttcagcaggaaacagctactgtcacggccctcgagccgggtcatgcgacactgtcggtt
acacacaacaatctgccttctgaaataacatcccaactcctgcgtacttctgtatacgtg
gtaaaacccagctacatgacgttcagtattaaggaggaagaggacagatgggtgttggag
acggggcggcagtattatttgactgttcgtatccatgacgacaagggccatgtggtgcac
ctgtcacagaatgtggtgattgttgtggaggagactgaggggttagtgacactcgagtct
ttgtctgatcccacctgccatctcctgcagaccatcatgaaaggaaagactttaatacag
gcctcactttatagcattgtctctgagaatggtaactattggcctgtcattccaccaatc
cgagtacgacaggaaatggaaatctacaatcctcttacccttcagccccctgtgattgtg
tttccatggcaaccccacaataagctataccagcacaatattcaggtggaaggaggaagt
ggctttgtatcttgggaagtgtctgatagagaaattgccacagttacagtaaaaggggtg
gtcacagcaggaacggcgaggggccaggctgaaattcaagtttcagattccaaaaacgcc
ctgcacaaagttgtcgggaaggtgatggttgtaaggcctgcccggttgcagctgattccc
cagcgaggcgattgtcgcgtgggggaccggatagagattcccattgctctctggggcatt
caggactcatcaaacacttgctctcagacaaattatgtctttaatacacattcagacact
cacaggagcatcagtgcaagttctcaggaaaacgtgttctccgatacacacagtcttcaa
tgcggagagtctctactggaggatagaaatcttgtgttagtcacagactgctctcagctc
tctctacacgtccacagtgaacctgccggcatcttcgcacacatgtcaggatctccgtct
ccaggacctggattctgtggaggggtccgtatggaggctgtttcacagggtcacgctgtt
gttaccatcacagtagaaacagagggatgcagcatcagcgagacgacaacactggtggcc
tacagccctctcaaatctcttgtgtctgaggttcttctctcggtgggctcatctcgtgtg
gttatgttcgagggggggcctcggccctggcccccggctcccttccgtttctttagtgac
gtcgaggtacagccggagaggggtgttaccgtggaggcattgaggacgatcgaagcaggg
ccacctcgacatgcgtatcgggtcacatgcaccgccatgggagaacagtggttggtcttc
aggtgtggtaatactccaggtccgttaaacgagattcccgcagtggaggagagcagagtt
caggtggtgtgtggcgtccccgcaagtctgtctctctctcttctctcctccccgtcctca
ccttcatccatccctgtgttctcccatcactattcctgcacacagcctcacttcccctgt
ggactgttgtctgtgtccaaaatgagggatgcaacgttgcagttatctgtgttggaccga
aagggggtgcagtttgacaatttcacttcctgttcagtaaactggacctcttctgaccct
ggtctgctctcattgtgcccccagtccacaatgaaagacagactaacccagacaggctac
aaactacacgcctggcaggttcttcaagcccacagacagactggaatagtgactgtcaat
gtcactcttagatgtccagagatgttgacagctccagtgtctcagtgtgtgaatctgcga
ttggtagatgacgtacagtgggccagacactctgtcactttattcaaccatccaaaagtc
acagaaaatctgtccttgatccatggctcaggtcattttcaaatccatctacaagacaac
cagttagccagcatcaaccatgtagagaacgggaatataatacaggtgtccccacttcaa
tctggttcttcagttcttttggctcatgacctctgtttgacctctgatcctgctgtggcc
tctttgcttgtctctgacatcaaagatttccggattgactttattaataccattgaggtc
agacattctgctgtagtgcaagtgcatgttttggactcaaagaatcaaccatttcttcat
cattacctgttgctcatgaacctcatgctcatcccttcttcatctatcatttctgtggag
aacgtggggtcagtggacaagtacagtgtgggattcagtgtgactggcctgaaagtgggc
gtggtcagtttccacctatcagcagtggatggtcatggatgtgttataagctcctcccac
aagaatatgcaagtttattctccattcattttgcagccatgtaaactaactctggcagtt
ggaagtgtgcgacaggtgaaatgggaaggtgggcctcagcctcagtacgccgtcaagttc
tcagtgagtgacagctctatcgccgtagtaactgagacaggattggtcagaggcttgaca
gtgggtgtggtcaaactcagaggagctcttcagacacaaaatacagaagcatttcttacc
tttttacaggatgaagtggaggtggaggtgtttaacctgacagcagtgaggatacaggct
cctttagtgactctatccataggaacagagatgccagtttatgtgatggggagtgacagc
agtcagaaccctctatctctgggtagtgtcgaggttggcctcagtttccactggagtcta
agcaaagcgggtgtcctggagatcaaaccaagacatgcacgggtgggtgttagtgtgtct
ccctctcacagtttctctgtgctggtgagggccagagctccaggcaggaccagtctgaaa
gtgcgtgtgcggctccaacagatagacaccagcaacacgtcactctctgatcatctcact
gacgagatacagatactggtgtttgaagagatgcagttaacagcaggaagctcaggatcc
atcctcatgtcccctctctctcagtaccccctgcagagcaataaagactcagtccattac
acccttagccggtgtgtctcaggcaaagggcttgttactcttgatgatcaaggggtgttg
aggacagggcctgatacaggccttgctattttggaggtttatgccatggatgtttgtggt
atcaaccaaacactgctgatcagtgtggaggtgtcaacggtttggtttgtacgtactttg
agtgtgtcatccgtgaacagtgacagtgagaaagcacttcctgccttccctctgggctgg
agtgtccgtttcaggactctatactatgataacatgggacaacagtttcactctcataat
gtacaaacaatgatcacagctaacagagatgacctcgtacaactgatagttgacaaagac
agtcagtcatttctagtgcaaacggcatcacccggtctaactgttttgagggtgcaagga
gacactacaaacccatttctcagcgattacacccctctgtttgtgatgcctgccatctca
gagcccccaggattcctgcgctctggggatgtcatctgcttcagctctcccatcacagac
cagcagggtcagcgaggcagatgggatgtgtcatcaaacaaaatccttcaaattaactct
gagactggagtagcatttgccaagaattttgggacggtggtggtttactacaagctagaa
gggggacagcaaaccttcagagaggtaacagtggagcctgcgtctattcctgtactcatt
ctccctgctgataggcttctcactaactggcctgaagcttcagaatacaccgtcagagtg
gatctgaacacctctgctgtcagcacagctcaatgcaatctagaccagtgggaagccata
gagaatgaactacatcctgaggcagagctactgtgttctctaaactttggtgccccctat
ccagagatgagagtactgcaggctatctttcatgcatcaccattctacgatgcaaacact
gctcagtacagttgcaggatctctgtgcagccccagtcagactctatcctccatctcctg
tccactctgcctctctccatccatctgtctgcctgtctgcggactcaatcaaccccagct
gccctgtcgcttcctcagtcacccccttcttttcagtcttcccttcagctcccgtatgtg
ccagcgttccattgtcctgtcaccaagatcaaactttcctctcagcagcctgtggctgaa
atcacagtgtttggcaccacgaacatgctcagcacactgagggttcaatcagacacccca
gacattgtgttatctgatccagtacggtcagatgaagatcccacactcatccttatttca
gtctattcaacctcacatttcctggatcaggtaccgtccgctgcaagcattaccctgtac
acagacctctctccacaaaaacacgttgtgatggtaactagagtgatggacaacccggag
tcaggtcatctcggagtttattcaaattctggccacttcttcatttcaatatttgctctg
tttgctgtactggcctccactgctgcacttttcatagtgtacaacagcatgctgtcactg
acacggactgtacctgcagtcctcacaccttctgctaatacagacgaagacaaacaacat
ttctatctgtggctcacaccatcaatgccaaaaccacaagtcctgcagagaaaacagtgg
ctctggagtactaaataa
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