Labeo rohita (rohu): 127178906
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Entry
127178906 CDS
T09007
Symbol
tap1
Name
(RefSeq) antigen peptide transporter 1
KO
K05653
ATP-binding cassette, subfamily B (MDR/TAP), member 2 [EC:
7.4.2.14
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh02010
ABC transporters
lroh04145
Phagosome
lroh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
127178906 (tap1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127178906 (tap1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127178906 (tap1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lroh02000
]
127178906 (tap1)
Enzymes [BR:
lroh01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
127178906 (tap1)
Transporters [BR:
lroh02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
127178906 (tap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_21
AAA_15
AAA_22
AAA_29
ABC_ATPase
AAA_16
AAA_23
RsgA_GTPase
AAA_13
AAA_30
Rad17
AAA_25
AAA_18
AAA_5
RNA_helicase
DUF87
nSTAND1
Med29
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
127178906
NCBI-ProteinID:
XP_050988039
LinkDB
All DBs
Position
16:complement(4305820..4317599)
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AA seq
729 aa
AA seq
DB search
MKDKMAVPLFTLLAVCVDVCAVMFIGAIQLSPSFINNTFILLWAGGLLRTCLLLFISFTY
PGSPAWMRGFEGVQTAIIHGLLYPVYISFLWACEKSTVELVWGWHTFQGVLQGYAVLALS
LLLWKRHVPTLLPTAKKEKTEQKASLQRLLGYMKPFSGRFAAVFFFVVISSLGEMAIPHY
TGKMTDWIMNEDEPEAFNHAITVMTLMTVMSAVCEFVCDLIYNITMSRIHTSIQGLVFQS
VLKQDIAFFDKSSTGDIVSRITTDTNTMSESLSEKLSLLMWYFMRVIFLLGSMVLLSPTL
TIFTILGLPIIWIIPEFSGQFYQKLSKQVQESLAKANDVATETFSSMKTVRSFANEDGET
ERYRKCLEDTYALNKVEAAAYAASTWTNSMSSLALKVSILYYGGRLVTGSDVSSGDLVSF
VLYELQFTSAVEVLMSYWPHVKKAVGASEKIFEYVDRTPDTPPDGSLAPKTLKGHVQFKN
ITFAYPKRPDTNVLKNVSIELKPGQITALVGPSGSGKSTIVSLLERFYQPQNGKILLDQK
PLVEYKDQYLHEKISVVSQEPVLFARSVRENIKYGKENASDEEMRAAAKQANADDFINSL
PKGYDTDAGEKGGQVSGGQKQRIAIARALIQKPQILVLDDATSSLDTESEHRVLHALRKE
LKNCTVLLITHRLSGVENADHIIFLRDGEVAEEGKREQLEAKNGFYAEFVKQQNTSIHRN
TEDVTNSSQ
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaaggataagatggccgttcctctgttcaccctgttggcagtgtgtgtggacgtgtgt
gcggtgatgttcattggtgctatccagctgtccccgtctttcattaataacacttttatc
ctgctgtgggccggtggactcctccgaacatgtctcctcctcttcatctccttcacctac
cctggcagcccggcgtggatgagaggattcgagggtgtacagacagctataattcacggt
cttctctatcctgtgtatatatctttcctctgggcttgtgagaagtccacagtggagctg
gtgtggggttggcacacctttcaaggggtccttcagggttatgcggtgttggctttgtct
ctgttgctgtggaaacgacatgttcccactctcctcccaacagccaaaaaagagaagacg
gagcagaaggcttcgctgcaaaggctgctgggatacatgaagccttttagtggacgcttt
gcagccgtctttttcttcgtggttatttcttcattaggtgaaatggcgattcctcattac
actggtaaaatgacagactggatcatgaatgaagatgaacccgaggcttttaatcatgct
atcacggtcatgacactgatgaccgttatgagtgctgtgtgtgagtttgtatgtgacctc
atctacaacatcaccatgagccgaatacacacgtccatccaaggactcgtcttccagtct
gtgctgaagcaggatattgcattcttcgataaatcttccacaggggacattgtgtctcgc
atcaccaccgacaccaacaccatgagtgagtctctgagtgagaagttgagtctgctcatg
tggtactttatgcgtgtcatcttcctgttggggtccatggtgctactctcccctacgctg
accatcttcaccatactcggcctccccatcatctggattatcccagaattttccggacag
ttttaccagaaactttctaaacaagtgcaagaatctctcgccaaggccaatgatgttgcc
acggaaaccttctcttctatgaagacagtaaggagctttgcaaatgaggacggagagacc
gaaaggtacaggaagtgcttagaggacacatacgcactgaacaaagtggaagccgctgca
tacgctgcctcaacttggaccaatagtatgtccagtctggctttaaaagtcagcatacta
tactatggaggacggcttgtgacaggaagtgatgtcagcagcggtgatctggtgtccttt
gtgctatacgagcttcagttcacatcagctgtggaggtactgatgtcatactggccgcat
gtaaagaaggcagtcggtgcttcagagaaaatctttgagtacgtggaccgaacacccgat
actcctcccgatggatcactcgctcctaaaactctaaagggacatgtgcaattcaaaaac
atcacctttgcttatccaaagcgaccagacacaaatgtgctgaagaacgtttcaattgag
ctgaagccaggccagatcacggccctagtgggtccatcaggttctggaaaaagcactatt
gtgagtttgctggagagattttaccagcctcaaaatgggaagattttattggaccagaag
ccactggtggagtacaaggaccaatatctgcatgagaagatcagtgttgtgtcgcaggag
ccagttctgtttgctcggtccgtgcgggaaaacatcaaatacggcaaagaaaatgcctct
gatgaagaaatgcgtgctgctgccaagcaggccaatgcagatgacttcattaatagttta
cctaaaggatatgacacagatgctggagaaaagggcggtcaggtctccggaggtcagaag
cagcgtattgccatcgctagagctttgattcagaaaccgcagattttagtgctggatgat
gccaccagctccctggacaccgagagtgaacacagggtgttacacgctctgcgtaaggag
ctgaagaactgtacggtgctgcttatcactcacagactgagcggtgttgaaaacgcagat
cacatcatcttcctccgagacggagaagttgctgaggaggggaagcgcgaacaactggaa
gccaaaaatggattctatgcagagtttgtgaaacaacagaatacttcaatccatcgcaac
acagaagacgttacaaactccagccagtga
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integrated database retrieval system
