Labeo rohita (rohu): 127178972
Help
Entry
127178972 CDS
T09007
Symbol
si:ch73-22o12.1
Name
(RefSeq) nectin-2 isoform X1
KO
K06531
poliovirus receptor-related protein 2
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03266
Virion - Herpesvirus
lroh04514
Cell adhesion molecules
lroh04520
Adherens junction
lroh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
127178972 (si:ch73-22o12.1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
127178972 (si:ch73-22o12.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
127178972 (si:ch73-22o12.1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
127178972 (si:ch73-22o12.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lroh04515
]
127178972 (si:ch73-22o12.1)
04090 CD molecules [BR:
lroh04090
]
127178972 (si:ch73-22o12.1)
Cell adhesion molecules [BR:
lroh04515
]
Immunoglobulin superfamily
Nectin family
127178972 (si:ch73-22o12.1)
CD molecules [BR:
lroh04090
]
Proteins
127178972 (si:ch73-22o12.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-set
C2-set_2
Ig_3
ig
Ig_2
I-set
Syndecan
Orf78
Motif
Other DBs
NCBI-GeneID:
127178972
NCBI-ProteinID:
XP_050988142
LinkDB
All DBs
Position
16:21911606..21999320
Genome browser
AA seq
505 aa
AA seq
DB search
MNMSGLFSALILLIIQGALAQRVRVDQEVVSYPGQTVTLRCQFPNPGETQLTQVSWIFER
TDAERTNIAVFHPNFGVNYPTKSPVVGRVSFIKDPPTLENPSIQIKDVKMTDEGRYICEY
ATYPSGNEQGVSSLVMLAKPTNMAATVTVTAGKTPVVVANCESSKGRPAATISWSTALNG
NVTTPITTENPDNTVSIRSSYMLAPQPSDNGKDISCIVSHRTMTQPETFPMKLVVEYLPQ
VQIVGYDNNWYRGRTSAYLTCQADGNPAPTTVTWKTLSGLMPETVQIKENRLTVQKVDDT
INTTFICEVRNSLGSGKDQVSIFVREQPPPPSNTGVIAGVIFACILAIILLVVLVYFLVF
HNRRQQHGYRGTGKPAGAPYDSITRLFGSAKSSKNGTGNNGNNNTPIYRGEVGLNEKTAN
QGMHPGGVALLETTHTHTAEDILLSREMDEVERKKFDELEEEDERYDHFGGGGPILQLRP
HDDDIDDDMESQRDGSVISRTAVYV
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgtcaggactgttcagcgcactcattctcctaatcattcaaggagcgttggct
cagcgcgtgagggtggaccaagaagtcgtgtcatatcctggtcagacagtgacactgcga
tgccagtttccgaacccaggcgaaacccagctcactcaggtgtcatggatctttgaacgg
actgatgcagagcgaaccaacattgcagttttccatccaaactttggggtaaattaccca
acaaaatctcctgtagtaggccgtgtcagttttataaaagatccgcccactttggagaac
ccatccattcagatcaaagatgtgaagatgaccgacgagggcagatatatctgtgaatat
gccacctatccctcaggcaatgaacagggagtctcttcgctcgtcatgttggctaaaccg
acgaacatggctgcaactgtcacagttaccgccggcaaaaccccagtcgtcgtggcgaac
tgtgaatcatccaagggccgtccggcagcgaccatttcatggtccacggcgcttaacgga
aacgtgacgacgccgatcacaacggaaaatccggataatacggtctccatcaggagttcc
tacatgctggctcctcagccgtcggataatggcaaagacatcagctgcatcgtgtcacat
cgtaccatgacccaacccgagaccttcccgatgaaactcgttgttgaatatcttccccag
gtgcaaatcgtagggtacgataacaattggtacagaggtcggacaagtgcatatttgacc
tgtcaggcagatggaaaccccgcccccaccaccgtcacctggaaaaccttgtccggactg
atgcctgaaacagtgcagattaaggaaaaccgtctcactgtgcaaaaggtggacgacacc
atcaacaccaccttcatctgcgaggtcagaaacagtttgggatccggcaaagatcaggtc
tccatcttcgtgagggaacaaccacctcccccatcaaacacgggcgtgatcgcaggcgta
atcttcgcgtgcattctggccatcatactgttagttgtcctcgtctacttcctggtattc
cataatcgccgccaacagcatggttaccgtggcaccggcaagccagccggtgctccctac
gactccattacccgcctctttggatctgccaaatcgagcaaaaatggcaccggaaacaac
gggaacaacaacacgcccatttacagaggagaggtggggcttaacgagaaaacggccaat
cagggcatgcatccagggggcgtggctttgctcgagaccacgcacactcatacggcagag
gacatcctgcttagcagagagatggacgaggtagaaagaaagaaattcgatgaacttgaa
gaagaggatgagcgatacgatcacttcggtgggggcggacccatcctacagctccgccca
cacgacgacgatatagatgatgacatggagtcccaaagggacggctccgtgatttctcgg
actgcagtctacgtgtaa
DBGET
integrated database retrieval system
