Labeo rohita (rohu): 127179534 Help Entry 127179534         CDS       T09007                                  Symbol thbs1a Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism lroh  Labeo rohita (rohu) Pathway lroh04115   p53 signaling pathway lroh04145   Phagosome lroh04148   Efferocytosis lroh04350   TGF-beta signaling pathway lroh04510   Focal adhesion lroh04512   ECM-receptor interaction lroh04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:lroh00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     127179534 (thbs1a)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     127179534 (thbs1a)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     127179534 (thbs1a)    04148 Efferocytosis     127179534 (thbs1a)   09143 Cell growth and death    04115 p53 signaling pathway     127179534 (thbs1a)   09144 Cellular community - eukaryotes    04510 Focal adhesion     127179534 (thbs1a)   09142 Cell motility    04820 Cytoskeleton in muscle cells     127179534 (thbs1a)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:lroh04131]     127179534 (thbs1a)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:lroh00536]     127179534 (thbs1a) Membrane trafficking [BR:lroh04131]  Endocytosis   Phagocytosis    Opsonins     127179534 (thbs1a) Glycosaminoglycan binding proteins [BR:lroh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    127179534 (thbs1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC CFP_C_TSP1 EGF_3 TSP1_ADAMTS cEGF EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  127179534 NCBI-ProteinID:  XP_050989071 LinkDB All DBs Position 17:complement(402628..410709) Genome browser AA seq 1174 aa AA seqDB search MTLRGLVLCLLFWSSVSSRHVEMPDDDTVFDLFELTNVHKKHHGVSLVKGPDPNSPAYKI LNPNLIPSVPELSFRDLIYSIQSERGFIFTANLKQAKRTRGSLISVERRDGTGSVFEIIS NGIANTVDLVYWTASGQHLVSIEDVNVANGHWKNITVFVQEDRAQVHVGCEEINNQELDA PIQQILNQENADISSLRIAKGAAKSDRFMGVLQNVRFVFGTTLDAILRNKGCESSTVIAD VMTLETPVNGSSPAIRTDYTGHKSKDLQDICGFSCDDLSSMFKELKGLGVVVKQLSNELH QVWAENNLIRTQIKVHEGVCLHNGIVYKDKDEWTVDSCTHCTCQNSATVCREISCPLMPC ANATVPDGECCPRCGTPNDAGVDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCDGTS VQTRDCYTQECDKRFKQNGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGKDCEGD GRQTEPCQKDPCPVNGGWGPWSPWDSCSVTCGGGLQRRHRLCNSPAPKYGGKECLGDAKG TRLCNSQLCPVDGCLSNPCFAGAKCTSFPDGSWKCGECPTGYTGDGIHCQDIDECKEVPD ACFVLNGVHQCVNTEPGYNCLPCPPRYSGSQPFGRGTEQAIANKQVCTPRNPCKDGSHDC NKNANCIYLGIFSDIMYRCECKPGYAGNGYICGEDSDLDGWPNTNLHCVENATYHCKKDN CPELPNSGQEDYDKDGIGDACDNDDDNDGIPDDGDNCPFIFNPRQFDHDRDQVGDRCDNC PYDSNPEQTDTDNNGEGDACAIDIDGDGILNEKDNCPYVYNTDQRDTDLDGVGDHCDNCP LEHNPDQIDSDSDNIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHD DDNDGVPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDVDNVPDIYDVCPENFGISETDF RRFQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGFDEFNAVDFSGTFFINTD RDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLR NALWHTGDTEGQVRTLWHDPKNIGWKDYTAYRWQLIHRPTTGLIRVTMYEGKKVLADSGT IYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDSS NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atgactctgagaggactcgttttgtgcctcttgttttggagttcggtgagcagcagacac gtagaaatgcctgacgatgacaccgtgttcgatttgttcgagctcacaaacgtccataag aagcatcacggggtgagtttagtgaagggacccgatccaaacagccccgcgtacaagatc ctgaacccgaacctgatcccctcagtgcccgagctctccttcagggacctgatctactcc atccagagcgagaggggcttcatcttcaccgccaacctcaagcaagccaagcgcacccga ggcagcctgatctccgtggagaggagagacggcaccggatccgtctttgagatcatctcg aacggcatagccaacacggtggatctggtgtactggaccgcgagcggacagcatctggtg tccattgaggacgtgaacgtggcgaacgggcactggaagaacatcacggtgtttgtgcag gaggatcgcgctcaggtccatgtgggctgcgaggagatcaacaatcaagaactcgatgct ccgatccagcagatcctgaatcaggagaacgcggacatctcgagcctgcggatcgccaaa ggagccgccaaatccgatcgcttcatgggagttctccagaatgtgcggtttgtttttgga acgacgctggacgcgattttacgcaacaaaggctgcgagagctcaaccgtaatcgctgat gtcatgaccctggaaacccccgtgaacggatccagtccggccatccgcactgattacacc ggacacaagtctaaagatctgcaggacatctgtggtttctcctgtgatgatctgtccagc atgtttaaggagctcaagggactcggcgtggtggtgaagcagttgtcaaacgagctccac caagtgtgggcagagaacaacttaatcaggactcagattaaagtccacgaaggggtttgt ctgcacaacggcatcgtttacaaagacaaagacgagtggacggtggacagctgcacccac tgcacatgtcagaactccgccactgtgtgccgtgagatctcctgtcctctcatgccctgt gccaacgctaccgtcccagacggcgaatgctgtccgcgctgcggaacaccgaacgacgcg ggcgtggacggctggtcgccctggtccgaatggacgcactgttcggtgacctgtggcaga ggcattcagcagcgcggacgctcttgcgaccggatcaatagcaactgcgacggcacgtct gtccagacgagagactgctacactcaagaatgtgacaaacgcttcaagcagaatggtggc tggagccactggtctccctggtcttcctgctcagtgacgtgtggcgagggcgtcatcact cgcatccggttgtgcaactcccctacgcctcagatgggcgggaaagactgcgagggagac ggtcgtcagaccgaaccgtgccagaaggacccgtgcccagtgaatggaggatggggaccc tggtcaccatgggattcttgctctgtcacatgcggtggaggactgcagcgcagacatcgt ctgtgtaacagccccgctcccaaatacggtggaaaagaatgtctgggagatgccaaagga acccgtttgtgcaactcccagttgtgtccagttgatggatgtctgtctaacccgtgtttc gctggggccaaatgcaccagcttccccgatggctcctggaagtgcggcgagtgtccgact ggatacactggagatggaatccactgtcaagacattgatgagtgcaaagaagttcccgat gcctgtttcgtgctcaatggagtccatcagtgtgtgaacacagaaccaggttacaactgc ctgccctgccctccacgctactctggatcgcagcccttcggcaggggaacggagcaggcc attgccaacaaacaggtctgcacacctagaaacccgtgcaaggatggcagccacgactgc aataagaatgccaactgcatctacctgggcatcttctctgacatcatgtaccgctgcgaa tgtaaaccaggctacgctgggaacggttacatctgtggagaggactctgaccttgatggg tggccaaacacgaacctccactgtgtggaaaatgccacctaccactgcaagaaggacaac tgtcctgaacttcccaactctgggcaagaagactatgacaaagatggaattggagacgct tgtgacaatgatgatgacaacgatgggatccctgatgacggggacaactgcccgttcatc ttcaacccaagacagttcgaccacgaccgcgatcaagttggcgaccgttgcgataattgc ccatatgacagtaatccagaacagaccgacactgacaacaacggcgagggtgatgcgtgt gctatcgacatcgatggtgacggcattctaaacgagaaggacaactgtccatatgtgtac aacactgaccagagagacactgacctggacggagttggtgaccactgtgacaactgccca ctggagcacaaccctgaccagatcgactctgactcggacaacattggagacaagtgtgac aacaaccaggacatcgatgaggatggacatcagaacaaccttgacaactgtccctacatc cccaacgccaaccaggccgaccacgataaggacggcaaaggagacgcctgcgatcatgac gacgacaacgacggtgtgccagacgacaaagacaactgccgactcgccttcaacccagat caactggattcagacggagatggacgaggcgacatttgcaaggatgactttgacgtcgat aacgtgccagatatttatgacgtttgcccggagaactttggcatcagtgaaacagacttc cgcaggttccaaatggttcctcttgatcccacaggaacgtcccaaatcgatcccaactgg gtcgtccgtcaccagggcaaagaacttctgcagaccgtcaactgcgatcctggcatcgct gttggttttgatgagttcaatgccgtggactttagcggcacgttcttcatcaacacggac cgtgacgacgactacgccggctttgtgtttggctaccaatccagctcacgtttctatgtg gtgatgtggaaacagatcacgcagacctactggtctcacacgcccactaaagcacagggt tactctggactgtccatcaaagtagtgaactcgaccacaggacctggcgaacacctcagg aacgctttgtggcacactggagacaccgaaggacaagtgcgcaccctgtggcatgacccc aagaatatcggctggaaagattacaccgcctacagatggcaactgatccacagacccaca accggactcatcagagttactatgtatgaaggcaagaaagtcttggctgattccggcacc atctatgacaagacatatgccggaggaagacttggcctcttcgtcttctctcaagagatg gtttacttctcagacctcaaatacgaatgccgagattcatcataa

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