KEGG   Labeo rohita (rohu): 127179790
Entry
127179790         CDS       T09007                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127179790 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lroh03041]
    127179790 (smndc1)
Spliceosome [BR:lroh03041]
 Complex A
  U2 snRNP components
   U2 related factors
    127179790 (smndc1)
 Complex B
    127179790 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    127179790 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor DUF2730 DUF2067 T3SS_needle_F Usp
Other DBs
NCBI-GeneID: 127179790
NCBI-ProteinID: XP_050989469
LinkDB
Position
17:12512791..12516446
AA seq 237 aa
MSEELVKQLNNYKAQLQQVEAALSTDPDNEDLLKLQKDLQEVIELTKDLLTSQPVEGATS
TKTSETVPPTRSWRVGDHCMATWTQDGQLYEAEIEEIDTENGTAAITFAGYGNAEVLPLH
VLKPVEEGRSREEKDGKPKSKKEMLAEQREYKKKKAQKKVQRMKELEQEREDQKSKWQQF
NNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNVRHLMPQ
NT seq 714 nt   +upstreamnt  +downstreamnt
atgtctgaagaattggtaaagcagttgaacaattataaagctcagctgcagcaggtggaa
gcagcactctctacagatccagataatgaagatctgcttaaactccagaaggacctccag
gaggtgattgagttgacaaaagacctgttgacatcacagccggtggagggtgcaaccagc
accaaaacctcagagacagtccctcccactcgcagctggagggtcggagaccattgcatg
gccacctggacccaggatggacagttgtatgaagcggaaattgaagagattgacactgag
aacggaacggcagccatcaccttcgcgggctacggcaatgcagaggtgttgccgcttcat
gtgctcaaaccagtggaggagggcaggagcagagaggagaaggatggaaagcccaaatcg
aagaaagagatgctggcagagcagagggaatataagaagaaaaaggcccagaaaaaggtg
caacgcatgaaggagctggagcaggagagagaagatcagaaatccaaatggcagcagttt
aacaataaagcctattcaaagaataaaaaaggacaggtgaaaaggagtatatttgcatct
ccagagagtgtgaatggaaaggtcggcgttggcacgtgtggtatcgcagataaacccatg
acccagtacaacgacacttcaaaatataacgtcaggcacctaatgccccagtga

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