KEGG   Labeo rohita (rohu): 127181878
Entry
127181878         CDS       T09007                                 
Symbol
tnfa
Name
(RefSeq) tumor necrosis factor a (TNF superfamily, member 2)
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh04010  MAPK signaling pathway
lroh04060  Cytokine-cytokine receptor interaction
lroh04150  mTOR signaling pathway
lroh04210  Apoptosis
lroh04217  Necroptosis
lroh04350  TGF-beta signaling pathway
lroh04620  Toll-like receptor signaling pathway
lroh04621  NOD-like receptor signaling pathway
lroh04622  RIG-I-like receptor signaling pathway
lroh04625  C-type lectin receptor signaling pathway
lroh04920  Adipocytokine signaling pathway
lroh05132  Salmonella infection
lroh05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    127181878 (tnfa)
   04350 TGF-beta signaling pathway
    127181878 (tnfa)
   04150 mTOR signaling pathway
    127181878 (tnfa)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    127181878 (tnfa)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    127181878 (tnfa)
   04217 Necroptosis
    127181878 (tnfa)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    127181878 (tnfa)
   04621 NOD-like receptor signaling pathway
    127181878 (tnfa)
   04622 RIG-I-like receptor signaling pathway
    127181878 (tnfa)
   04625 C-type lectin receptor signaling pathway
    127181878 (tnfa)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    127181878 (tnfa)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    127181878 (tnfa)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    127181878 (tnfa)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:lroh04052]
    127181878 (tnfa)
   00536 Glycosaminoglycan binding proteins [BR:lroh00536]
    127181878 (tnfa)
Cytokines and neuropeptides [BR:lroh04052]
 Cytokines
  Tumor necrosis fators
   127181878 (tnfa)
Glycosaminoglycan binding proteins [BR:lroh00536]
 Heparan sulfate / Heparin
  Cytokines
   127181878 (tnfa)
SSDB
Motif
Pfam: TNF Pox_E8 SPRTN_ZBD
Other DBs
NCBI-GeneID: 127181878
NCBI-ProteinID: XP_050992827
LinkDB
Position
19:7998795..8001756
AA seq 235 aa
MDLKSQFLEEGELPLPQVMVSRRKPGSSRSGVWRVCGVLLAVALCAAAAVCFTLNKSQNN
QESGKEIRLTLRDNLSKDNVTSRAAIHLTGAYNPNVSADKLDWRRNQDQAFTSGGLKVVD
REIIIPADGIYFVYSQVSFHISCKTDMPQDHDVLHMSHAVSRYSDSYGTYKPLFSAIRSA
CVHAPDNEDLWYNTIYLGAAFNLHAEDKLRTETTVELLPRVETENGKTFFGVFAL
NT seq 708 nt   +upstreamnt  +downstreamnt
atggatcttaaaagtcagtttcttgaagaaggagagctgcctttaccacaggtgatggtg
tcgaggagaaagcccggctcttcaaggtcaggtgtatggcgggtctgcggtgtcctcctg
gctgtggccctgtgtgccgccgctgccgtctgcttcacgctcaacaagtctcagaacaat
caggaaagtggaaaagagattagactcacattgagagataatctttcaaaagacaatgtc
acttccagggctgctatccatctaacaggtgcatacaaccctaacgtgtctgcagacaag
ctagattggagaaggaaccaggaccaggctttcacttcaggcggcttgaaagtagtggac
cgagagatcatcattcccgcggacggcatttacttcgtctacagccaggtgtctttccac
atcagctgcaagactgacatgcctcaggaccacgacgttctgcatatgagccacgcggtg
agccgctattccgattcttatggcacctacaagccgcttttcagcgcgatccgctccgcc
tgcgtgcacgcgcctgacaatgaagatctgtggtacaacacgatttatctcggcgcggcc
ttcaacctgcatgccgaagacaaactgcgcaccgaaacgacggtagaactcctgccccgc
gtcgagaccgaaaatggaaagaccttttttggggtgtttgctttatga

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