Labeo rohita (rohu): 127181924
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Entry
127181924 CDS
T09007
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 1 homolog
KO
K12798
NACHT, LRR and PYD domains-containing protein 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
127181924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127181924
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lroh04054
]
127181924
Membrane trafficking [BR:
lroh04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
127181924
Pattern recognition receptors [BR:
lroh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127181924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
FIIND
NLRC4_HD2
CARD
NOD2_WH
SHOCT_2
AAA
nSTAND3
AAA_16
Motif
Other DBs
NCBI-GeneID:
127181924
NCBI-ProteinID:
XP_050992902
LinkDB
All DBs
Position
2:32030893..32059426
Genome browser
AA seq
1367 aa
AA seq
DB search
MSSSGWTAAVMKSLLDQLHQFKVELDNKLKRDTYLTGWSAADSTTESAVMESLVQKITQL
GDKLDRVLKMDKSIGSSAAVLSDSAVIEQLEYLIHQCRDELDTRLTMDKPSGWSAADSST
ESAFMEFVAHQLTEIEDELDEMCSLPVLLPRYKKLSDSCKLWMKYLLPDALVDLATHYTE
PVLIKRSKEQTEKYCQGYVKSVHASGTGTSSQLLSNDRNHSIRIDQLFSPDCDGNTPKTV
ILVGDSGKGKTLMLQKIMWDWASEELYTLNFDAVFLLKFDELKCISEEMSLNELLSWSCS
LTSDQILEILKLTPEKVLILIDGIDEFSYNPHIQMSSPTDPFQKAPIMDILNCLLRDLLL
LESPVIVTSRYTVAAELSNLFKRPQRFTEIVGFSERGVQEYFQKFFQNEKLFRKSYESVK
ANESLLAACSVPLLCWMVCLCLKKHFIRDDHVMRELKTTTSIYVHLVSTLLEHHDQSQSV
LTMLRSLGQLAEEGVKKQQVLFDENCVAKTGLDPAITPFLYKYEQFFKLYKHFSFQEFFT
ALYYVLLDEEESWCKISELFNLMESEAIIYRSSLIFRGRLSNPIPSVMMFLCGLFNDKVS
SSVFEKIKCAVPQIIKMKKKQLKKKVMEKIPAMTRQYGLELFALHCLYELQDERLVAEAL
KTHSFIDLSNVSLRSTDCWVLLYCLQCCPHIRNLNLMYCDLTAEKLKVLQPVLCMCENMR
MSVEHLSEVGDLIQILGEAKILRELKVQEDEYSSESPRWSLHLSVTCGDVLLSLNSSEKN
PSFPAVLNISLTCPQSEISSTDWTLFLQRLSKTGKLAEDSSALDEHVSLLLSSFHSVGLK
MLDLKLVSLNESWASGIISLVQTCTSLQQLSVSVTELLLEEGLMLLEKSLTDPHCTVIIE
GWKWKERALCLSYEEVKIHFKPKELDKLSSKSTDQCTENNCSHCCNEKVEGLFTPEELDE
LEELDELEKLNISDSESSGLNLQPLPVCQSCVHIVDSDQWVQVEPSVCTDEGGSEFRIST
PAGRFECSRTRMRWVCADDVTLQYRAVDGHFLTAELERVQCQRIGPVIDVTVISGKLEEA
HLPHYACLAKSYPSLKDAVKVLSVEDEEICLKSVELTRFHARLIQPSFSPTAVVIKKDAP
VEQHLDLLIFMKGTNPLILRVYLFPQLDTFSNKRIMEDEKAKDPNILEIVHPRPNMAFQM
ETPHILDVCDADVIPLEGISFSSEAKPNFFEIRQGEVTDKDVQMTLTRQRDQTLVWKTVI
YKQKLIQKQKVKRALKRKQDNVYLFDDNWLELINRVTNPLRIADKLLYEKVISEEEYSKI
RSTPCLQEKMREICYIVRNGCNMKKAKLMLIIEQEEEFLFKDLENPS
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctctggttggaccgctgctgtcatgaaatctctgttagatcagttacatcaa
ttcaaagtggaactggacaataagctgaaaagagatacatatttaacaggttggagcgct
gcagactcaacgactgaaagtgctgtcatggaatctctagtacaaaaaataacacagcta
ggagacaaactagacagagtgctgaaaatggataaatccattggttcgagtgctgcagtg
ctgagtgatagtgctgtcatagaacagctagaatatctaatacatcaatgcagagatgaa
ctagacacaaggctgacaatggataaaccatctggttggagcgctgcagactcatcaact
gaaagtgctttcatggaatttgtggcacatcaacttacagaaatagaagatgaactagac
gaaatgtgtagtttacctgtactcttacctaggtacaagaaattatcggattcatgtaag
ctttggatgaagtatcttttacctgatgcacttgtggatctggccacccattatactgaa
ccagtgctcataaagaggagcaaagagcagactgagaaatactgtcaaggatatgtgaag
tctgtgcacgcttctggaacgggaacatcatctcaattgttatcaaatgacaggaatcac
agcatcagaatagatcagttgttcagtcccgactgtgatggaaacacaccaaaaactgtt
attcttgttggtgattctggaaaagggaaaaccttaatgctacagaagatcatgtgggac
tgggcttctgaagaactttacactttaaactttgatgcagtttttcttctgaagtttgat
gagctgaagtgtatttctgaggagatgagcttgaatgagctcttgagctggagctgcagt
ttaacatcagatcagatcttagagatactgaagttaacaccagagaaagtcctcatcctc
attgatggaatagatgagttctcatacaatccacacattcaaatgtcatcgcccactgat
ccattccagaaagccccaattatggacattcttaactgcctgctaagggatctgttgcta
cttgagtcacctgtgattgtcacctctagatacacagttgctgctgaattaagcaatctg
tttaaaagacctcagcgtttcactgagattgtgggtttctctgagagaggggtgcaggag
tacttccagaagttctttcagaatgagaaactcttcaggaaatcatatgagagtgtgaag
gcaaatgaaagcctcttggctgcctgttctgtgcctttgctgtgttggatggtctgttta
tgtctgaagaagcactttatacgtgatgatcatgtgatgagagaactaaagacaaccacc
tccatatatgtgcacttagtgtccactctactggagcatcatgaccagagtcagtctgtc
ctcaccatgctgaggagtctgggtcagctggcagaggaaggggtgaagaagcaacaagtc
ctttttgatgaaaactgtgtggccaagactggcttagatcctgctattactccattcttg
tataaatatgaacagttcttcaagttgtataagcatttcagctttcaggagtttttcact
gctctttattatgtcttgctggatgaagaagagtcctggtgtaaaatcagtgagctgttt
aacttgatggaatctgaggctataatttacaggtcatctctgatttttagaggtaggctg
tcaaatcccatcccttcagtcatgatgtttctctgtggtctctttaatgacaaggtgagc
agctcagtctttgaaaagatcaagtgtgctgttcctcaaatcataaaaatgaagaaaaag
caactaaagaaaaaggtgatggaaaagattcctgcaatgacacggcagtatggattagag
ttatttgctctccactgtctatatgagctccaggatgagagattagttgcagaagctctt
aaaacacacagtttcattgatctgtctaacgtttctctgaggagcacagactgttgggtg
ctgctgtactgtcttcagtgctgtccacacatcagaaacctgaacctcatgtactgtgat
ttaacagctgagaaactcaaggttcttcagccagtgctctgtatgtgtgagaatatgagg
atgtcagtagagcatctgtcagaagttggagatttgatccagattcttggtgaagcaaaa
atcttgagagagctgaaagttcaggaggatgaatacagttctgagagtcccagatggtca
cttcacctgtcagtcacttgtggagatgtcttgttgtctttgaactcctcagagaagaat
ccatcatttccagcagtcttaaacatcagtcttacatgtccacaatcagagatatccagc
actgactggacactcttcttacagagactcagcaagacaggaaaattagcagaggattct
tcagctcttgatgagcatgtcagtttgctgctgtcttcatttcactctgtgggtttgaag
atgttggatctgaagctggtcagtctgaatgagagctgggcttctgggatcatttccctt
gtccagacctgcaccagtctacagcagctcagtgtcagtgtcactgaattgcttttggag
gagggactcatgttactggagaaatcactgacagatccacactgcactgtgatcattgaa
gggtggaagtggaaagaacgggccttgtgtctcagctatgaggaagtgaagattcacttc
aaaccaaaagagttggataagttgagcagtaaatccactgaccagtgcacagaaaacaac
tgtagtcattgctgtaatgagaaagtggagggtctcttcacaccagaggagctggatgag
ctggaagagctggatgagctggaaaagctgaacatctctgactctgaatcgtctggactg
aatcttcagccgctcccagtgtgtcagtcttgtgttcacattgttgattctgatcagtgg
gttcaggtggagccgtcagtctgtacagatgaaggagggtcagagttcaggatcagcact
ccggcgggtcgattcgagtgcagcaggaccagaatgcgatgggtctgtgctgatgacgtc
actctccagtaccgtgcagtggatggacatttccttacagcagagctggagagagttcag
tgtcagcgaattggtcctgtgattgatgtgacagtgatctcagggaaactggaggaggcc
catctgcctcattatgcctgtttagcgaagtcatacccctctctcaaagatgctgtaaag
gtcctcagtgttgaagatgaggaaatctgtttgaaatcagtagagttgacccgttttcat
gcaagactaatccagccttccttttctcctactgctgtggttataaaaaaagacgcccct
gttgaacaacatttagatcttcttatctttatgaaaggaacaaatcctcttattctccgt
gtctacttgttcccacagcttgatactttttcaaacaagagaattatggaggatgaaaaa
gcaaaagatcctaatatccttgagattgtgcaccccaggccaaacatggcatttcaaatg
gaaacaccacacattcttgatgtgtgtgatgctgatgttattcctttagaagggatttca
ttttcatccgaagctaagccaaacttcttcgagatcaggcaaggtgaagttacagataag
gatgtacagatgactctaaccagacagcgcgatcaaacacttgtgtggaaaacagttatt
tataaacaaaaactaattcagaaacaaaaagtaaagagagcgttaaagcgcaagcaagac
aatgtttatttatttgatgacaattggctagaactcattaacagggttacaaatccgtta
cgaattgcagacaaactgctttatgaaaaagtaattagtgaagaagaatactcaaaaatt
agatctactccatgtcttcaagaaaaaatgagagagatctgttacatagtacgaaatggt
tgtaacatgaagaaagctaaattaatgttaattattgagcaagaagaggaatttcttttt
aaagatttagaaaacccatcgtag
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