Labeo rohita (rohu): 127182985 Help Entry 127182985         CDS       T09007                                  Symbol thbs1b Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism lroh  Labeo rohita (rohu) Pathway lroh04115   p53 signaling pathway lroh04145   Phagosome lroh04148   Efferocytosis lroh04350   TGF-beta signaling pathway lroh04510   Focal adhesion lroh04512   ECM-receptor interaction lroh04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:lroh00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     127182985 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     127182985 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     127182985 (thbs1b)    04148 Efferocytosis     127182985 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     127182985 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     127182985 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     127182985 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:lroh04131]     127182985 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:lroh00536]     127182985 (thbs1b) Membrane trafficking [BR:lroh04131]  Endocytosis   Phagocytosis    Opsonins     127182985 (thbs1b) Glycosaminoglycan binding proteins [BR:lroh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    127182985 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC CFP_C_TSP1 EGF_3 TSP1_ADAMTS Laminin_G_3 cEGF TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  127182985 NCBI-ProteinID:  XP_050994674 LinkDB All DBs Position 20:complement(18763665..18775197) Genome browser AA seq 1171 aa AA seqDB search MKSTAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPENAFRDLIDSIHAERGFLLLVNFKQFKHTRGSLLTVEKKDGSGPIFEITS NGKANTLDIVFSTENKQQIVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA SIQTILTQETPGVANLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQNSAMTDII TLDNPMNGSRPAIRTDYTGHKTKDLQMICGFSCEDLAAMFKELKGLGVVVQELSNELRKV TDEKNVFMSRMGIHGGVCLHNGIMHKNKEEWTVDDCTECTCQNSATVCRKISCPIIPCAN ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ TRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMEGKDCQGEGR QTERCQKSPCPINGGWGPWSPWDACSVTCGGGIQNRKRLCNNPVPMHGGKDCVGDAKASQ LCNKQACPIDGCLSNPCFEGAQCTSFPDGSWKCGKCPTGYTGNGINCKDINECKEVPDAC FEFNGVHRCENTVPGYNCLPCPSRYTGPQPFGRGVEDAASKKQVCTPRNPCLDGSHDCNK NARCNYLGHFADPMYRCECRPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCP NLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPLIFNPRQYDYDRDDVGDRCDNCPY NSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNVDQKDTDFDGVGDQCDNCPLE HNPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDD NDGIPDDKDNCRLVPNADQLDSDGDGRGDACKDDFDQDNVLDIYDVCPENFDISETDFRK FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTDRD DDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNA LWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIY DKTYAGGRLGLFVFSQEMVYFSDLKYECRDG NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgaagtcaactgcaatctttttgctactgatgctttggaactgcgagagcgccagagtc gcagaaagtcgagacgacaacagcgtttacgatctgtttgagctcgtccaagtgccgagg aaaaaccacggggtgactctggtgaaaggcgacgacccgtacagccccgcctacaagatc ctgaaccccgacctgatccccccggttcccgagaacgccttcagggacctaatcgattcc attcacgctgagcgaggatttctgctcctggtcaatttcaagcagttcaaacacacgagg ggaagccttctgaccgtagaaaagaaagatggctcaggacccattttcgaaatcacttcg aacgggaaagccaacactctggacattgttttttccaccgaaaacaagcagcagatcgtc tccatcgaggaggcggatttggcggtgggacactggaaaaacatcactcttttcgtgcag gaggacagggttcagttctatgtgggatgtgaggaggtgaatacagcggagctcgatgct tctatccagactatcctcactcaggagacccccggtgtggcgaacctgaggattggcaag ggcgcagtgaaggacaggttcatgggggtgttgcaaaacgtgcgatttgtgttcggaacc acactggaagcaattctgaggaacaaaggatgccaaaactcagctatgactgatatcatc acccttgacaatcccatgaatggatccagacctgcaatcaggactgattacactggacac aaaacaaaagatctgcagatgatttgtggcttttcgtgtgaggacctggctgccatgttc aaagaactgaaaggtcttggtgtggtggtgcaagagctgtccaatgaactccgcaaagtg acggacgagaaaaacgtgttcatgagtcgcatgggcattcatggtggtgtctgtcttcac aatggaattatgcacaaaaacaaggaggagtggacagtggacgattgcacggagtgcact tgccagaactctgcaacggtgtgccgcaagatttcatgtcccataatcccatgcgcaaac gccacagtgcctgatggggagtgctgcccccgatgtggaaccccgagcgactccgctgag gatggctggtccccctggtctgaatggactcattgttctgtgtcctgtggaaggggcatt cagcagcgcggccgctcctgcgaccgcatcaataacaactgcgagggcacatcggtgcag accagagactgctaccttcaggagtgcgacaagcgctttaagcaggatggcagctggagt cactggtcaccctggtcttcctgttcggtcacctgcggtgctggcgttattacgcgcatc cgtctctgcaactccccaacacctcaaatggaaggaaaagactgccagggcgaaggtcgg caaactgagaggtgtcagaaatcaccatgtccgatcaatggtggctggggaccatggtca ccttgggatgcttgctctgttacatgcggcggtggcatccaaaaccgcaaacgtctttgt aacaatccagtacccatgcatggcggcaaagactgtgtgggagacgcaaaagccagccag ctttgcaacaaacaagcctgtccaatcgatggatgcctttcaaacccatgctttgagggc gcccagtgtacaagctttccagatggctcttggaaatgtggaaaatgccctacaggatac actggcaatggaatcaactgcaaggatatcaatgagtgtaaggaggtcccagatgcctgc tttgaatttaatggagtccacaggtgtgagaacacagtgccaggctacaactgtctgcca tgcccctctcgctacacaggcccacagccgttcggtcgaggagtggaagacgcagcttct aagaaacaggtgtgcacgcctcgcaatccctgtctcgacggaagccacgactgcaataag aacgctcgctgcaactacctgggtcatttcgcagaccccatgtaccgctgtgagtgcaga cctggctttgctggaaatggccacatctgtggagaagacactgatcttgatggctggccc aatgctgatcttgtgtgtgtcgagaacgcaacctatcactgcaagaaggacaactgcccc aatcttcccaactctgggcaagaggactatgacaaggacggaatcggcgatgcttgtgat gatgatgatgacgacgatggcattcctgatgacagggacaactgcccactcatcttcaac ccaagacagtacgactatgatcgcgatgatgtgggagaccgctgcgataactgtccgtac aacagcaacccagaccagaccgacactgacaacaatggggaaggtgacgcctgtgctgtg gacattgatggagatggtattttgaatgagaacgacaactgcccgtatctgtacaacgtt gaccagaaagacactgatttcgatggagttggtgaccagtgtgacaactgccctctggag cacaaccctgaccagcttgactctgattctgaccgtgtcggagacaaatgtgacagcaac caggatatcgatgaggacggtcaccagaacaacctggacaactgcccgtacatccctaat gctaaccaggctgatcacgacaaggatggtaaaggggatgcttgcgactatgatgacgac aatgatggcattcctgatgacaaagacaactgcagattggttcccaatgcggatcaactg gattctgatggcgatggacgtggagatgcctgtaaagatgacttcgaccaggataatgtt ctagatatctatgacgtctgtcctgagaactttgacattagtgaaacagacttccgcaag ttccagatggttcctctggatcccaagggcacttctcagatcgaccccaactgggtggtt cgtcaccaaggaaaggaactggttcagacagtcaactgcgaccctggcattgctgttggt ttcgatgagttcaattcagtcgacttcagcggaacgttcttcatcaacacggacagagac gacgactacgccggcttcgttttcggataccagtccagctctcgcttctacgtggtcatg tggaagcagatcacacagacctactggtccagcacacctaccaaggcacagggttactca gggctgtcaatcaaagtggttaactccaccacagggcctggcgaacatctgaggaacgcc ctctggcacaccggagacactccaggacaggtgcgcacactgtggcacgacccaaagaac gtgggatggaaggacttcactgcttacagatggcacttgactcatagaccaagaactgga cacataagagtggtcatgtatgaaggcaaaaagatcatggcggattctggaagaatttat gacaaaacatacgcaggaggaagactgggtctctttgtcttctcacaagagatggtgtac ttctcagacctcaaatatgaatgcagagatggataa

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