Limnoglobus roseus: PX52LOC_06856
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Entry
PX52LOC_06856 CDS
T06556
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lrs
Limnoglobus roseus
Pathway
lrs03030
DNA replication
lrs03410
Base excision repair
lrs03420
Nucleotide excision repair
lrs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PX52LOC_06856
03410 Base excision repair
PX52LOC_06856
03420 Nucleotide excision repair
PX52LOC_06856
03430 Mismatch repair
PX52LOC_06856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrs03032
]
PX52LOC_06856
03400 DNA repair and recombination proteins [BR:
lrs03400
]
PX52LOC_06856
Enzymes [BR:
lrs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PX52LOC_06856
DNA replication proteins [BR:
lrs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PX52LOC_06856
DNA repair and recombination proteins [BR:
lrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PX52LOC_06856
NER (nucleotide excision repair)
GGR (global genome repair) factors
PX52LOC_06856
MMR (mismatch excision repair)
DNA ligase
PX52LOC_06856
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PX52LOC_06856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
HHH_5
PTCB-BRCT
BRCT_2
HHH
Nlig-Ia
DUF8054_C
LEA_2
Motif
Other DBs
NCBI-ProteinID:
QEL19777
UniProt:
A0A5C1ANQ8
LinkDB
All DBs
Position
7820460..7822472
Genome browser
AA seq
670 aa
AA seq
DB search
MPTPSDRAKTLRQTIDHHNHKYYVDAAPEISDREFDKLLQELIDLEKQHPELVTPDSPTQ
RVGGQPIEGFAKVTHRVPMMSIENSYSAEDLRKFDADVRKATGKTDNPYTVEMKIDGVSM
SLTYVDGLFVQGATRGSGDVGDDVTHNLKTIAGIPLRLKSKDAPRLFEVRGEIYMTRAEL
VRINAERVKDEEEPYANTRNLTAGTLKQLDPKECAKRKLSFFAYGLGASEGVEIKSQTEL
FDKLKAFGFPVNPHTKLCQTVDEVIDYCNSWDAKRRDLAYDTDGMVVKLNDFAVRQRLGA
TSKVPRWAKAYKFEAEQGITKLGSVEFSVGKFGELTPVALFDPPVQLAGTKVGRASMHNA
SWVEKMDVRYGDTVVVEKAGEIIPQVVSVVTESRTGKEKPIVWPTACPACGGPVEKNESA
VSYGFYCADVGRCPAQVAQRIISYARRERMDIDGLGDEVAKQLVESGLVTRVTDLYRLTT
KQLLALEKFADTKAQNLVAGIAASKERGLARLLAALTIYGVGGSMADLLAEQFPSLDLIV
NATEDDLAKIKGFGPKRAKSVSDFFHSEEGTRLVGELRDLGVKLTHDQKAPAAGAQVFQG
KTLVVTGALTKYDRAGIEQLIKEHGGKASGSVSKKTDYLIAGENAGSKLAKAQELGVKVL
TEDEFEKLIQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgccgagcgaccgggccaaaaccctgcggcaaaccatcgaccaccacaaccat
aagtactacgtcgacgccgccccggagatcagcgaccgcgagttcgacaaactccttcaa
gagttgatcgacctggagaagcagcatccggagttggtcacgccggacagcccgacgcaa
cgggtcggcggccagccgatcgaggggttcgcgaaggtcacgcaccgcgtgccgatgatg
tcgatcgagaacagctactcggccgaggacttgcggaagttcgacgccgacgtgcggaag
gccactggcaagaccgacaacccgtacacggtcgagatgaagatcgacggcgtcagcatg
tcgctcacttacgtggacggcctcttcgtgcagggggcgacccgcggcagtggcgacgtc
ggcgacgacgtaactcacaacctcaagaccatcgccggcatccccctgcggctcaagtcg
aaagatgccccgaggctcttcgaagtccgcggcgaaatttacatgacgcgggccgagttg
gtgcggatcaatgccgagcgcgtcaaggacgaggaagagccctacgcgaatacccgcaac
ctcacggccggcacgctgaagcaactcgacccgaaggagtgcgcgaagcggaagctcagc
ttcttcgcctacggcctcggcgcgtcggagggagtcgagatcaagtcgcagacagagctg
ttcgacaaactcaaggcgttcggcttcccggtcaacccgcacacgaagctctgccagacc
gtcgacgaggtgatcgactactgcaactcgtgggacgcgaagcggcgcgacctcgcttat
gacaccgacggcatggtggtgaagctcaacgacttcgccgtgcgtcagcggctcggggcg
acgagcaaggtgccccggtgggcgaaggcgtacaagttcgaggccgaacagggcatcacc
aaactcggcagcgtcgagttctccgtcggcaagttcggcgaactgacgcccgtcgcgctc
ttcgacccgccggtccaactcgcgggcacgaaggtcggccgcgcgagcatgcacaacgcc
tcgtgggtcgagaagatggacgtgcggtacggcgacacggtcgtcgtcgagaaggcgggc
gagatcatcccgcaggtcgtctctgttgtgactgagtcgcggaccggcaaagagaagccg
atcgtctggcctacggcctgccccgcgtgcggcgggccggtcgaaaagaacgagtcggcc
gtcagctacggcttctactgtgccgacgtgggccgttgcccggcccaggtcgcacaacgg
atcatttcctacgcccgccgcgagcggatggacatcgacggcctcggcgacgaagtcgcg
aaacaactcgtcgagagcggcctggtcacgcgcgtcaccgacctctaccggctcaccacg
aagcaactgctcgccctggagaagtttgcggacaccaaggcccagaaccttgtcgccggg
atcgccgcgagcaaggagcgtggtctggcccgcctactggccgcactgacgatctacggc
gtcggcggcagcatggccgacctgctggcggaacagttcccgagtctcgacctcatcgtg
aacgcgaccgaggacgacctggcgaagatcaaaggcttcggcccgaaacgggcgaagagc
gtctccgacttcttccacagcgaagaggggacgcgactcgtcggcgagttgcgcgacctc
ggcgtgaagctgacgcacgatcaaaaggcccccgccgcgggagcgcaagtcttccagggc
aagaccctcgtagtcaccggcgctctgacgaagtacgaccgtgccggcatcgagcaactc
atcaaagagcacggcggcaaggcgtcgggaagcgtgtcgaagaagaccgactacctcatc
gccggcgagaacgccggcagcaaactggcgaaggcgcaagaactcggcgtgaaggtgctg
accgaggacgagttcgagaagttgattcagtaa
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