Limosilactobacillus reuteri I5007: LRI_0530
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Entry
LRI_0530 CDS
T02701
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lrt
Limosilactobacillus reuteri I5007
Pathway
lrt03030
DNA replication
lrt03410
Base excision repair
lrt03420
Nucleotide excision repair
lrt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRI_0530
03410 Base excision repair
LRI_0530
03420 Nucleotide excision repair
LRI_0530
03430 Mismatch repair
LRI_0530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrt03032
]
LRI_0530
03400 DNA repair and recombination proteins [BR:
lrt03400
]
LRI_0530
Enzymes [BR:
lrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LRI_0530
DNA replication proteins [BR:
lrt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LRI_0530
DNA repair and recombination proteins [BR:
lrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LRI_0530
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRI_0530
MMR (mismatch excision repair)
DNA ligase
LRI_0530
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRI_0530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
HHH_3
Hydrolase_6
HHH_8
Zn_ribbon_NUD
UPF0758_N
Relaxase_C
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AGN98739
UniProt:
R9WF39
LinkDB
All DBs
Position
536069..538111
Genome browser
AA seq
680 aa
AA seq
DB search
MSEKQTPVKELTLQEAQDEIKPLRAKLIKWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQ
FPQLLSADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQENRDVEVEP
EYNLELKIDGLSLSLVYENGKLVQGSTRGNGAIGEDVTANVRTIKSVPAELPEPLSIEVR
GECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTFMYYVPEYQ
KLGVKTQAEALDRMRELGFNVNPNNRVVHNREEIEKYIEEYTAQRDKLTYGIDGIVEKVN
DLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMDPIQLAGTT
VSRASLHNPDYLREKDIRIGDTVYLHKAGDIIPEISKVDLTKRPADSVEYEIPTKCPVCG
SELVHLDGEVALRCINPMCPAQIKEGLAHFASRNAMNIDGLGPRIIEQLWDKELIHDVAG
LYRLNHDQLLTLDKFGEKSTANLLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFG
DLDSLMKADADEISAINGIGPTIGESIVTYFANQQVIKLIDELREVGVNFAYLGSRSNAN
PDSEWNGRRVVLTGKLTEMTRGEAKSWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQ
DLGIEVWNEQQFSQAMKEEQ
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaaacagacgccagtaaaagaattaacccttcaagaagctcaagatgagatt
aagccattacgagcaaaattgattaagtggggaaaagaatattatgaacaagacaatcca
actgtagaggaccatgtatatgatcgtgcttatcagcgattagtacagctggaagaacaa
tttccacaattgctctctgccgattcgccaacccaacgagtaggaggagcaacagaaagc
caattaacaaaagttcggcacgaaattccgatgttatcgatgggggatgtcttttcgatt
gaagaattgatggactttaaccaacgacaacaggaaaatcgggatgtcgaagttgagccc
gaatataatctcgaactaaaaatcgatggtctttctctttcacttgtttacgagaatgga
aagttagttcaaggttctacgcgtggcaatggagcgattggtgaagatgttactgctaat
gtccgaactatcaagtcagttcccgcagaattgccagagccattgtcaatcgaggttcgg
ggcgaatgttatatgcccaaagcagcttttgcgaagttaaatgctaaacgcgaagcagag
ggattgccggtttttgctaatccccggaatgcggcagccggaagtttgcggcaactagat
ccaaaagtaacggcgcaacgtgaactagatacatttatgtactatgttcctgaatatcaa
aagctaggcgttaagacccaagcagaagcacttgatcgtatgcgagaattaggctttaat
gttaatcctaataatcgagttgtccataaccgtgaagagattgagaagtatattgaagaa
tatacagctcaacgagacaagctcacttacgggatcgatggaattgttgaaaaagtaaat
gatcttgatacggaagttgcccttgggaatacagttaaggtgccacgctgggaaattgct
tataaattccctcccgaagaacaagcaacgattgtccgtgatattgtctggactgtcgga
cggaccggcaatgtaacaccaacagcagttatggacccaattcaattagcgggtacaacg
gttagtcgagcttctttgcataatcctgattacttgcgtgagaaagatattcggattggt
gatactgtttacctgcataaagcgggtgacattattcctgaaatttcaaaagtagaccta
actaagcgtcctgcagattctgttgaatatgagattccaacgaagtgtccggtctgtggc
tcggaattagttcatcttgatggtgaagttgcgttacgctgtattaatccaatgtgtcca
gcacagattaaagaaggcttagcacatttcgcttctcggaatgccatgaatattgatggg
cttggtcctagaattattgaacagctatgggataaagaattaattcatgatgttgctggt
ttatatcggcttaatcatgaccaattattaactttagataaatttggcgagaaatcgacc
gctaacctattgacatcgatcgataatagtcgtaataattctgtcgagcgcttattattt
ggtcttggaattcgtcatgtaggtgcgaaggctgctcgaattatcatggaacattttggt
gatcttgatagcttaatgaaggctgatgccgatgaaatttctgcgattaatggaattggg
ccaacaattggcgaaagtatcgtaacttattttgctaatcaacaggttattaaattaatt
gacgaattgcgagaagttggggtaaactttgcttatcttggctcacggtcaaatgctaat
cctgatagtgaatggaatggtcggcgagtagtactgacaggtaagctaactgaaatgact
cgtggggaagcaaaatcatggcttgaaaaccacggggctaaagtaaccggtagcgtctca
aagaaaacagatattgtcattgctggggctgatgctggtagcaagctaacaaaagctcaa
gacttgggtattgaggtatggaatgaacagcaattcagccaagcaatgaaggaggaacag
taa
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integrated database retrieval system
