Limosilactobacillus reuteri SD2112: HMPREF0538_20551
Help
Entry
HMPREF0538_20551 CDS
T01551
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03030
DNA replication
lru03410
Base excision repair
lru03420
Nucleotide excision repair
lru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0538_20551 (ligA)
03410 Base excision repair
HMPREF0538_20551 (ligA)
03420 Nucleotide excision repair
HMPREF0538_20551 (ligA)
03430 Mismatch repair
HMPREF0538_20551 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lru03032
]
HMPREF0538_20551 (ligA)
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_20551 (ligA)
Enzymes [BR:
lru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF0538_20551 (ligA)
DNA replication proteins [BR:
lru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF0538_20551 (ligA)
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF0538_20551 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0538_20551 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMPREF0538_20551 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0538_20551 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH_8
HHH_3
HHH
DUF4796_N
Relaxase_C
Motif
Other DBs
NCBI-ProteinID:
AEI56763
UniProt:
F8DMY9
LinkDB
All DBs
Position
complement(541868..543910)
Genome browser
AA seq
680 aa
AA seq
DB search
MSQKQTPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQ
FPQLLSADSPTQRVGGATESQLTKVRHEIPMLSMGDVFSIEELMDFNQRQQENRDVEVEP
EYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTANVRTIKSVPAELPEPLSIEVR
GECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTFIYYVPEYQ
KLGVKTQAEALDRMRELGFNVNLNNRVVHNREEIEKYIEEYTAQRDKLTYGIDGIVEKVN
DLDTEVALGNTVKVPRWEIAYKFPPEEQATIVRDIVWTVGRTGNVTPTAVMDPVQLAGTT
VSRASLHNPDYLREKDIRIGDTVYLHKAGDIIPEISKVDLTKRPADSVEYEIPTKCPVCS
SELVHLDGEVALRCINPMCPAQIKEGLAHFASRNAMNIDGLGPRIIEQLWDKELIHDVAG
LYRLNHDQLLTLDKFGEKSTANLLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFG
DLDSLMKANDDEISAISGIGPTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNAN
PDSEWNGRRVVLTGKLTEMTRGEAKLWLENHGAKVTGSVSKKTDIVIAGADAGSKLTKAQ
DLGIDVWNEQQFSQAMKEEQ
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaaacagacgccagtaaaagaattaacccttcaagaagctcaagatgagatt
aagccattacgagcaaaattgactgagtggggaaaagaatattatgaacaagataatcca
accgtagaggatcatgtatatgaccgtgcttatcagcgattagtacagctggaagaacaa
tttccacaattgctctctgctgattcgccaactcaacgagtaggaggagcaacagaaagc
caattaacaaaagttcggcacgaaattccgatgttatcgatgggggatgtcttttcgatt
gaagaattgatggactttaaccaacgacaacaggaaaatcgggatgttgaagttgaaccc
gaatataatctcgaactaaaaatcgatggtctttctctttcacttgtttacgagaatgga
aagttagttcaaggttctacgcgtggcaatggaacgattggtgaagatgttactgctaat
gtccgaactatcaagtcagttcccgcagaattgccagaaccattatcgatcgaggttcgg
ggcgaatgttatatgcccaaagcggcttttgcaaagttaaatgctaaacgcgaagcagaa
ggattgccggtttttgctaatcctcggaatgcagcagccggaagtttgcggcaattagat
ccgaaagtaacggcgcaacgtgaactagatacatttatatattatgttcctgaatatcaa
aagttgggggtgaagacccaagcggaagcacttgatcgtatgcgagaattagggtttaat
gttaatcttaataatcgagttgttcataaccgtgaagagattgagaagtatattgaagaa
tatacagctcaacgagacaagctcacttacgggatcgatggaattgttgaaaaagtaaac
gaccttgatacggaagttgcccttgggaatacagttaaggtgccacgctgggaaattgct
tataaattccctcccgaagagcaagcaacgattgtccgtgatattgtctggactgtcggt
cggaccggcaatgtaacgccaacagcagttatggacccagttcaattagcgggtacaaca
gttagtcgagcttctttgcataatcctgattacttgcgtgaaaaagatattcggattggt
gatactgtttacctgcataaagcgggtgacattattcctgaaatttcaaaagtagatcta
actaaacgtcctgcagattcagttgaatatgagattccaacgaagtgtccggtctgtagc
tcagaattagttcatcttgatggtgaagttgcgttacgctgtattaatccaatgtgtcca
gcacagattaaagaaggcttagcacatttcgcttcccggaatgccatgaatattgatgga
cttggtcctagaatcattgaacagctatgggataaagaattgattcatgatgttgccggt
ttatatcgacttaatcatgaccaattattaactttagataaatttggcgagaaatcgacc
gctaacctattgacatcgatcgataatagtcgtaataattctgtcgagcgcttattattt
ggtcttggaattcggcatgttggtgcgaaagctgctcgaattatcatggaacatttcggt
gaccttgatagcttaatgaaggctaatgatgatgagatttctgcgattagtggaattggt
ccaacaattggcgaaagtatcgtaacttattttgctaatcaacaagttgttaaattaatt
gacgaattacgagaagttggggtaaactttgcttatcttggctcacggtcaaatgctaat
cctgatagtgaatggaatggtcggcgagtagtactgactggtaagctaactgaaatgact
cgtggggaagcaaaattatggcttgaaaaccacggggctaaggtaaccggaagcgtctca
aagaaaacagatattgtcattgctggggctgatgctggtagtaagctaacaaaagctcaa
gacttgggtattgacgtatggaatgaacagcaattcagccaagcaatgaaggaggaacag
taa
DBGET
integrated database retrieval system
