Lynx rufus (bobcat): 124518640
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Entry
124518640 CDS
T08475
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
lruf
Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lruf03037
]
124518640
04515 Cell adhesion molecules [BR:
lruf04515
]
124518640
Cilium and associated proteins [BR:
lruf03037
]
Primary cilia and associated proteins
USH complex and associated proteins
124518640
Cell adhesion molecules [BR:
lruf04515
]
Cadherins
Protocadherins
124518640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_CELSR2_9th
Cadherin_FAT4_N
Motif
Other DBs
NCBI-GeneID:
124518640
NCBI-ProteinID:
XP_046944607
LinkDB
All DBs
Position
Unknown
AA seq
1928 aa
AA seq
DB search
MLQRFYLWKCLASGVILGALSAVCFGQYDDDWQYEDCKLARGGPPATIVAIDEESRNGTI
LVDNMLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIV
VQVQCVNKKVGTVIYHEVRIVVRDRNDNSPTFKHDSYYATVNELTPVGTTIFTGFSGDNG
ATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYFVIIQAN
DRAQNLNERRTTTTTLTVDILDGDDLGPMFLPCVLVPNTRDCRPLTYQAAIPELRTPEEL
NPIVVTPPIQAVDQDRNIQPPADRPGILYSILVGTPEDYPRFFHMHPRTAELSLLEPVNR
DFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGATIS
DSLNLTTPLRIVALDKDIEDTKDPELHLFLNDYTSVFTVTQTGITRYLTLLQPVDREEQQ
TYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYVYTDMSPGDSVIQLTAVD
ADEGSNGEITYEILVGAQGDFTINRTTGLITIAQGVALTVGRTYALTVQAADNAPPAERR
HSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLLNLQATDREGDPITYAIENG
DPQRVFNLSETTGILTLGKALDRESTDRYILIVTASDGRPDGTSTATVNVLVTDVNDNAP
VFDPYLPRNLSVVEEEANAFVGQVRATDPDAGINGQVHYSLGNFNNLFRITSNGSIYTAV
KLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIVEENLPAG
TTFLQIEAKDVDLGANVSYRIRSPEVKHFFALHPFTGELSLLRSLDYESFPDQEASITFL
VEAFDIYGTMPPGIATVTVIVKDMNDYPPVFSKRIYKGMVAPDAVKGTPITTVYAEDADP
PGLPASRVRYRVDDVQFPYPASIFDVEEDSGRVITRVNLNEEPTTIFKLVVVAFDDGEPV
MSSSATVKILVLHPGEIPRFTQEEYRPPPVSELAARGTTVGVISAAAVNQSIVYTIVSGN
EDGLFGIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQ
DENDHPPVFQKKFYIGGVSEDARMFTSVLRVKATDKDTGNYSAMAYRLIIPPIKEGKEGF
VVETYTGLIKTAMLFHNMRRSYFKFQVIATDNYGQGLSGKADVLVSVVNQLDMQVIVSNV
PPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDYTKCDLTVYAIDP
QTNRAIDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEG
ALLALAFIIILCCIPAILVVLVSYRQFKVRQAECTKTARIQSALPAAKPAAPAPAPVAAP
PPPPPPPGAHLYEELGDSTMHNLFLLYHFQQSRGNKSVSEDRKNQHSGMPFSSSTVRAHK
EARVDGPLNDQPASARTFPLVSDEDALSTHGTLYKETVDPRPTNSDFLLRTDFKGSLLPR
TKGRSKSLRGPREMFQRMWNQPVCFPQRPVWELPKRPETTDLQHWQSNGREGRKESPGTC
PNQRGSGRPLPRAGDTQAAEREEMRPGDSLPVLGTEHVASPSSDSSCFSPSPRSSFSTLP
TVSRTVELQSEPHAAISPADCSLELSPSTPGILHSPVFRREAPVCMLTVEAERNIFEILP
EPPRISPPPTPVAFSYLPPSHPPPPLLPLSGPPSLPSTSPSLPLPSPPSLPPPCPPLPSP
LSPPPSVPSTRCVPIPAVKGTVGVTPAEERTSSGTQLPVSTTECKADPRREPKGILKHIK
NVADLEKSIANMYSQIEKNFPPMHNSDLETSCPPETENVEMTSGQNQGNLHRIVEGTENR
PHSESTSL
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgttacaacggttttacctctggaaatgcttagcttcgggggtcatcctgggagctctc
tctgcagtctgcttcggccagtacgatgatgactggcaatatgaggattgcaaactagct
aggggaggaccgccagccaccatagttgccattgatgaagaaagccggaatggtacgatt
ctggtggataacatgctgatcaaagggactgcgggaggaccagaccccaccatcgaactt
tccttaaaggacaacgtggattactgggtgttgctggaccccgtcaagcaaatgctcttc
ctgaacagcacgggcagagttctggatagagaccccccgatgaacatacactcgatcgtg
gtgcaggtgcagtgcgtcaacaagaaagtgggcaccgtcatctaccatgaggttcgcatc
gtggtgagggaccgcaacgacaactctcccacgttcaagcacgacagctactacgccacg
gtgaatgagctcactccggtcggcaccacaatatttacagggttttcaggagacaacgga
gctacagacatagatgatggaccaaatgggcagatagaatacgtcatccagtacaatccg
gaggacccgacatccaatgacacctttgaaatccccctcatgttgactgggaatgtggtg
ttaaggaagaggctcaactatgaagacaagactcggtactttgtcatcatccaagctaat
gaccgggcacaaaatctgaacgagcggcgaaccaccaccaccaccctcacggtagatatt
ctggacggagatgacttgggtccgatgtttcttccttgtgtccttgtgccgaacactcgt
gactgtcgcccgctcacctaccaagctgccatacctgagctcagaactccggaagaactg
aaccccatcgtggttaccccgcccatccaagctgttgaccaggaccggaacattcagcca
ccagcagacagaccaggcatcctctactctatccttgttgggactccggaggattaccca
cgatttttccatatgcatcctaggacggcagaacttagcctcctggagcccgtaaacaga
gattttcaccagaaatttgatttggttattaaggctgaacaagacaatggtcaccctctg
ccagcctttgccagtctacatattgaaatactggatgaaaacaaccagagtccctacttc
acgatgcccagttatcaaggctacattctggaatctgccccagtgggagccactatctcc
gacagtctgaatttgaccacccctcttagaattgtggctctggacaaggacatagaggat
acgaaagacccagagcttcacctttttctcaacgattacacctcagtcttcaccgtcaca
cagaccggtatcactcgctacctcaccctacttcaaccagtggaccgagaagagcagcaa
acttacactttttcgataacagcatttgatggtgtgcaagaaagcgagccagttattgtc
aatatccgggtgatggatgcaaatgataacactccaaccttccctgaaatatcctatgat
gtctacgtttatacagacatgagccccggggacagcgtcatacagctcaccgcggtggat
gcagatgaagggtccaacggggagattacctacgaaatcctagttggggctcagggagac
ttcaccatcaaccgaaccacggggctcatcaccatcgctcagggggtggcgctgacagtg
gggcgcacctatgcgctcacagtccaggctgcagacaacgcgcctcctgcagagagaagg
cactccatctgcaccgtgtacattgaagtgcttcctccaaataatcagagccctccccgc
ttcccacagttgatgtacagccttgaaatcagtgaagccatgaggattggtgctgtttta
ttaaatctccaggcaactgatcgagagggagacccaataacatatgccattgagaatgga
gatccccagcgagtttttaatctttcagaaactactgggattctaaccttagggaaagcc
ctggacagggagagcaccgatcgctacattctgatcgtcactgcttccgatggcaggccg
gatgggacctcaactgccacggtaaatgtgttagtgacagatgtcaatgacaacgcccca
gtgttcgatccctatctgcctcgaaatctgtccgtggtcgaagaagaagccaatgcgttt
gtgggtcaagtaagggcaacagaccctgatgcgggaataaatggccaggtgcactacagt
ctgggcaacttcaataatctctttcgcatcacatctaacgggagtatttacacagcagtg
aagcttaaccgagaggtcagggactactacgaacttgtcgttgtggcaaccgatggggcg
gttcacccgcgtcactcaactctgacgctggccatcaaagtgttggatattgatgataac
agtcccgtgttcactaactcaacatatactgtcatcgtagaagagaacctgccagccggg
accaccttccttcagatagaggccaaagatgttgacctcggagcaaatgtgtcttatcgg
atcagaagcccagaagtcaagcacttttttgcactacatccgtttacaggagaactctcc
ctcttaaggagtttggactatgagtcatttccagaccaggaagcaagcatcacttttctc
gtggaggccttcgatatttatggaacgatgccaccgggcattgctactgtcacagtgata
gtgaaggatatgaatgattatcctccagtatttagtaaacgaatctacaaagggatggtg
gctccagatgctgtcaagggcacacctatcaccacggtttatgctgaagacgcagaccct
cctggattacctgcaagtcgtgtgaggtacagagtagatgatgtccagtttccttatcct
gctagtatttttgacgtagaagaagattctggaagagtaataactcgagtcaatcttaat
gaagaacctacgacaatttttaagttggtggtcgtcgcttttgatgatggtgagcctgtg
atgtccagcagtgccacggtgaagattctggtcttacatcctggagaaatcccacgcttc
acacaagaggaatatagaccccctccggtgagcgaacttgctgccagaggcacaacggtt
ggtgtcatttctgcagcggccgtcaaccagagtatcgtgtacaccattgtctcaggaaac
gaagacggtctgtttggaatccacaacatcacgggtgttatctatgtcaatgcccctctg
gattacgagacaagaacgagctatgtgcttcgcgtccaggctgattccctggaagtggtc
ctcgccaatctccgagttccttcgaaaagcaatacggctaaagtgtatattgaaattcag
gatgaaaatgatcatcccccagtgtttcagaaaaaattctacattggaggtgtgtctgaa
gatgcaagaatgtttacttctgtgctcagagttaaggctactgacaaagatactggcaat
tatagcgccatggcataccgactcatcattccaccaattaaagagggaaaagaaggattt
gtggtagaaacgtataccgggctcatcaaaaccgctatgcttttccacaacatgagaagg
tcctacttcaaattccaagtcatcgcgactgacaactatgggcaggggctaagtggcaag
gcagatgtgctggtctctgtggtcaaccagctggacatgcaggtgatcgtttcgaacgtg
cccccgactctggtggagaaaaagatagaagaccttacagagattttggatcggtatgtt
caggagcaaattcctggtgccaaagtggtggtggagtccatcggtgcccgcaggcatggg
gatgccttttcgctagaagattacaccaaatgtgacctgactgtctatgcaatcgacccc
caaaccaacagagccatcgacagaaatgagctttttaaatttttggatggcaaactgctt
gatatcaataaagactttcagccgtattacggcgaaggaggacgcattctggagatccgg
accccggaggcagtgaccagcattaaaaagcgaggagagagcctaggctatacagagggg
gccctgcttgcactcgccttcatcatcatcctctgctgtatccctgccatcttggtagtt
ctggtcagctacagacagtttaaagtacgccaagccgagtgcaccaagacagcgcgaatc
cagtcggcactacccgcagccaagcctgctgcacctgcgcccgcacctgtggccgcgccc
ccgccgcccccgccgccccccggggcgcacctgtatgaggagctgggagacagcaccatg
cataatcttttccttctctaccatttccaacaaagcaggggaaataaatcagtctcagaa
gacaggaaaaatcaacacagtgggatgcccttttcttccagcactgttcgggctcacaaa
gaggctcgtgtagacggaccacttaatgaccagcccgcgtcggcaagaacattcccactg
gtatctgatgaggacgccttgagtacccacggtactctttataaggaaaccgtagatcca
agaccaacaaattcagactttttgctcagaacagatttcaaaggctcacttttacccaga
acaaaaggcaggagtaagtccctgaggggcccgagagaaatgtttcagaggatgtggaat
cagccagtctgcttccctcagagaccagtgtgggaacttcccaagagaccagagaccaca
gatctgcagcactggcagagcaacgggcgggaaggtagaaaggaaagccctggaacctgt
ccaaaccaaagaggtagcgggaggcccctgccgagagccggggatacgcaggcggcagag
agagaggaaatgaggccaggtgattcactgcctgtgttgggaacagaacacgtggcatct
ccatcttcagactcttcctgtttctctccttcacctcgctcctccttctccactttgcca
actgtgtcaagaactgtggagctccagtccgagcctcatgccgccatttctccggctgac
tgttccttggaactttctccttcgacgcctggcattttgcattctccagtctttaggaga
gaggcacccgtgtgtatgctgactgtggaagccgaaaggaacattttcgaaattcttccc
gaaccaccccgtatctctcctcctccaactcctgttgctttttcctatcttcctccttcc
catcctcctcctccacttcttccgctgtccggccccccttcccttccctctacttctcct
tcactccctctcccctcccctccttccctccctccaccatgcccccctcttccttctcca
ctgtctcctcccccttcggttccgtccaccaggtgtgtccctataccagctgttaaaggt
actgtcggtgtaacaccagcggaggaaaggacgtcctctgggacacagctgccagtatct
accacggagtgcaaggcggatccccgaagggaaccaaaaggcatcctcaagcatattaaa
aacgtagcagaccttgaaaagtcaatagctaacatgtacagtcaaatagaaaaaaacttc
ccaccaatgcacaactcagaccttgaaactagttgccctccagagacagaaaatgtggaa
atgacctctggacaaaaccaggggaatttgcacaggattgtcgagggaactgaaaaccga
cctcacagtgaatctacttccctgtaa
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integrated database retrieval system
