Leptotrichia rugosa: AB8B22_05915
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Entry
AB8B22_05915 CDS
T10901
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lrug Leptotrichia rugosa
Pathway
lrug03030
DNA replication
lrug03410
Base excision repair
lrug03420
Nucleotide excision repair
lrug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lrug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB8B22_05915 (ligA)
03410 Base excision repair
AB8B22_05915 (ligA)
03420 Nucleotide excision repair
AB8B22_05915 (ligA)
03430 Mismatch repair
AB8B22_05915 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrug03032
]
AB8B22_05915 (ligA)
03400 DNA repair and recombination proteins [BR:
lrug03400
]
AB8B22_05915 (ligA)
Enzymes [BR:
lrug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB8B22_05915 (ligA)
DNA replication proteins [BR:
lrug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB8B22_05915 (ligA)
DNA repair and recombination proteins [BR:
lrug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB8B22_05915 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB8B22_05915 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB8B22_05915 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB8B22_05915 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RNA_ligase
HHH_3
HMBD
YcaO_C
UPF0758_N
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
XDU65965
UniProt:
A0AB39VE32
LinkDB
All DBs
Position
1200930..1202948
Genome browser
AA seq
672 aa
AA seq
DB search
MNSLDNEILKNYTNLKNKIEKYNNFYYNEDNPIISDMEYDGLLRKLKEMEKEYPALLEID
DSPTEKIGGTASNKFSKVEHKVPMLSLSNTYNIAEIEDFDKRVKKIINFSEKIEYILELK
LDGLSISLIYENGNLARAVTRGDGKIGEDVTENIMEIESIPKKLKEPISLEVRGEIILPI
QNFNKINEEREENGEEVFANPRNAASGTIRQLDSTIVSKRGLDCYLYYLVNAENYGIKTH
LESIKFIEKLGFKTTKVFEKYSDFKILEKSIEKWRTKREKLDYETDGLVIKINDFSFYET
LGYTTKSPRWAIAYKFPAEQVKTRLLDVTFQVGRTGVVTPVAELEAVNLSGSVVKRASLH
NFDEIRRKDIKIGDNVIVEKAAEIIPQVVNVVFDDRKGTEKEIKEPENCPACGTKLVKEE
GLVALKCLNPHCPEKIKREISYFVSRDAMNISGLGEKIVEKFIELEKIKTVVDIYFLENY
RNELENLEKMGKKSVENLLNSINESKNQDFSKVLYALGIPFVGKFNANLLSKTFKDIDVL
KEKSVEELLEVKGIGEKAAIAVNTFLNNENNWKIITELKEIGLKFKFEEDELKEVRDNPI
KGKNFLATGKLQKYKRNEIKDIILEKGGNYLSAVSKNLDFLIAGKKAGSKLEKAQNLGIR
VLSEDEFEKEFL
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaactcacttgataatgaaatattaaaaaattatacaaatttgaaaaacaaaattgaa
aaatataataatttttattacaacgaagataatccaattatttcagatatggaatatgac
ggactcttgcgaaagttaaaagagatggaaaaagaatatcccgctcttttagaaattgat
gattctccgactgaaaaaattggagggactgcgagtaataaattttctaaagttgaacat
aaagttcctatgctaagtttatcaaatacttataacatcgctgaaatcgaagattttgac
aaaagagtgaaaaaaataattaatttttctgaaaaaattgaatatattctggaactgaaa
ttggacggacttagtatcagccttatttatgaaaatgggaacttagctagagcagtcact
cgtggcgacggaaaaatcggagaagatgtaacggaaaatattatggaaattgaatctatt
ccgaagaaactgaaagagccgatttcgctggaagttcgtggggaaattattttgccgatt
caaaattttaataaaataaacgaagagcgggaagaaaatggggaagaagtttttgcaaat
ccaagaaatgcagcttcaggaacaattagacagctggattccacaattgtttcaaaaaga
ggacttgactgctatctctattatttggtcaatgcggaaaattatggaattaaaacacat
ttggaaagtattaaatttattgaaaagctgggatttaagacaactaaagtctttgagaaa
tattccgactttaaaattcttgaaaaatctattgaaaaatggcgaacaaaaagagaaaaa
ttggattatgaaaccgatggacttgtcataaaaataaatgatttctcattttatgaaact
ttgggctacacgacaaaaagtccacgatgggcaatcgcttataaatttcctgctgaacaa
gttaaaacaagacttttggatgtgacttttcaagtgggaagaacgggagttgtgacacct
gttgcagaactggaagctgtgaatttatcagggtcggtcgtaaaaagagctagtcttcat
aactttgatgaaattcgtagaaaagatataaaaattggggacaatgtgattgtcgaaaaa
gcggcagaaattataccgcaagtcgtaaacgtcgtatttgatgacagaaaagggactgaa
aaagaaataaaagaacctgaaaactgtcctgcttgtggtacaaaacttgtaaaagaagag
ggccttgttgcactaaaatgcttaaatccacactgtcctgaaaaaattaaaagagaaatt
tcctattttgtgtcaagggatgccatgaacatttcaggtctgggagaaaaaattgtggaa
aaatttattgaacttgaaaaaattaaaactgtagttgatatttattttttggaaaattat
cgcaatgaattagaaaatttggaaaagatgggaaaaaaaagcgttgaaaatttgttaaac
agcataaacgaaagtaaaaatcaagacttttccaaagttctgtatgctcttggaatccca
tttgttgggaaatttaacgccaaccttttgagtaaaacttttaaagatattgatgtttta
aaagaaaagtcagttgaagaacttttggaagtaaaaggaattggagaaaaagctgcaatt
gccgtaaacacttttttaaataacgaaaataactggaaaattattacagaacttaaagag
attggcttaaaatttaaatttgaagaggacgaactaaaagaagttagagataatcctata
aaaggaaaaaatttccttgcaactggaaaattgcaaaaatacaaacgaaatgaaataaaa
gatataattttagaaaaaggtggaaattatttatctgccgtttcaaaaaatttggatttt
ttaattgctggaaaaaaagctggaagtaagttagaaaaagctcaaaatttaggaattaga
gtactaagcgaagatgaatttgaaaaagaatttttataa
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