Latilactobacillus sakei subsp. sakei: LCA_1551
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Entry
LCA_1551 CDS
T00299
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lsa
Latilactobacillus sakei subsp. sakei
Pathway
lsa03030
DNA replication
lsa03410
Base excision repair
lsa03420
Nucleotide excision repair
lsa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCA_1551 (ligA)
03410 Base excision repair
LCA_1551 (ligA)
03420 Nucleotide excision repair
LCA_1551 (ligA)
03430 Mismatch repair
LCA_1551 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsa03032
]
LCA_1551 (ligA)
03400 DNA repair and recombination proteins [BR:
lsa03400
]
LCA_1551 (ligA)
Enzymes [BR:
lsa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LCA_1551 (ligA)
DNA replication proteins [BR:
lsa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCA_1551 (ligA)
DNA repair and recombination proteins [BR:
lsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LCA_1551 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCA_1551 (ligA)
MMR (mismatch excision repair)
DNA ligase
LCA_1551 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCA_1551 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
zf-IS66
DUF819
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
CAI55858
UniProt:
Q38VC5
LinkDB
All DBs
Position
complement(1521218..1523251)
Genome browser
AA seq
677 aa
AA seq
DB search
MGLAKLVEDYTQSEAASLAQQLRDQLADYSQAYYTQDAPLVEDHVYDELYRDLEQLEAAF
PVIVTNDSPTQKVGGQVLPGFTKVTHEIPMLSMGDVFSEAELAAFDQRLRKNTATEIEYN
VELKIDGLAIDLIYEKGRFVRGATRGNGTIGEDITQNLKTIKAIPQKLTRPVSIEVRGEC
YMPKAAFADLNQKREAEGQAPFANPRNAAAGSLRQLDAKVAAARQLSAFIYTIVTFDDVQ
ATTQSEALHVLAELGFNVNPTSVVCQNMAEVQAFIEQYQGTRNDLAYGIDGVVLKVNDLA
LQRQLGNTVKVPRWEIAYKFPPEEAETVIREIEWTVGRTGVVTPTAVMDPVQLAGTTVAR
ASLHNADMLRDKDVRLLDTVLLHKAGDIIPEISQVVLAKRPSDSQAYGIPTTCPSCGHDL
VHLDEEVALRCINPMCPAQMKEQLTHFASRNAMNIDGLGPRIITQLLEKELIHDVADLYR
LTADDLAQLDKFKEKSINNLLNAIDASRQNSLERLLFGLGIRHVGAKAARLLAEHFQNLA
ALMASDQETIITVDTIGTIIADSLVTYFADSQVQTLMAELEAVGVNLTYTGVTKAQAATS
DSYFNGKTVVLTGKLEQYTRGELKQLLEDNGAKVTGSVSKKTDALIAGQDAGSKLEKAQS
LAIPIINEADLDNYLAQ
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgggtttagccaaactagttgaagattatacccagagtgaggcggcttcacttgcgcaa
caattacgtgatcaattagccgactacagtcaggcgtactatacacaggatgcgccctta
gtggaagatcatgtgtatgatgaactatatcgtgatttagaacagctcgaagccgctttt
ccggtgattgtgaccaatgattcaccaactcaaaaagtcggtggccaagtcttaccgggt
tttacaaaagtcacgcatgagattcccatgttatcgatgggggatgtcttttctgaagcc
gagttggcagcgtttgaccaacggttacgaaaaaatacggcaacggaaatcgagtataat
gtcgagttaaaaatcgatggcttagcgattgatttaatttatgaaaaaggtcgctttgtt
cgcggtgccacgcggggtaacgggacaattggcgaagatattactcagaatttaaagacc
atcaaagcgattccacaaaaactaacgcgccctgtttcaatcgaggtccgtggcgaatgt
tacatgcccaaagcggcttttgcggatttgaatcaaaaacgagaagcagaaggccaagcg
ccatttgctaatccccggaacgcggcggctggtagtttacgccaattggatgctaaggtg
gcagctgcgcgtcaattgagtgcctttatctatacgattgtcacgtttgatgatgtgcag
gcgacaacgcaaagtgaggccctccatgttttagcggaattaggctttaacgtgaatcca
acgtctgttgtttgtcaaaatatggctgaagtacaggcatttatcgaacaataccaagga
acacggaacgatttggcgtacggcatcgatggggttgtgttaaaagtaaacgacctcgcg
ctccaacgtcaattaggtaatacagtcaaagtgccccgttgggaaattgcctataaattt
ccacctgaagaagcagagactgttattcgtgaaatcgaatggactgttggccgaacggga
gttgtgacaccaaccgcggtgatggatccggttcaactagcggggacgaccgttgcgcgg
gcatcgctacacaatgcggatatgttacgcgataaagatgtccgcttgcttgatacagta
cttctgcataaagcaggggacattatccctgaaatttcgcaagttgttttagccaaacgc
cctagcgatagccaagcgtacggcataccaacaacttgtccatcgtgtggtcacgattta
gtgcatctggatgaagaagtcgcattacgctgcattaatccaatgtgtccggctcaaatg
aaggaacaactcacccattttgcttcccggaacgcgatgaatatcgatggtttagggcct
cgaatcattacacaactcttagaaaaagagttaatccacgatgtggccgatttataccgt
ttaacggcggatgatttagcccaattggataaatttaaagaaaaatctattaataattta
ttaaatgccatcgatgctagtcgtcagaattcgctagaaaggttattatttgggttaggg
attcgccatgtgggtgctaaagctgcccgtttattggctgaacatttccaaaacttagca
gccttgatggcgagtgatcaagaaaccatcattacggttgatacgattggcacgattatt
gccgacagcctggtgacttattttgcggatagccaagtccaaaccttgatggcagaatta
gaagcagttggcgttaatttaacttataccggtgttactaaagcccaagcagcaactagt
gacagctattttaacggtaagacggttgttttaacgggtaaattagagcagtatacacgt
ggtgaattgaagcaattgcttgaagataacggcgcgaaggtcacaggttctgtttctaag
aagacggatgcgttaattgcgggtcaagatgctggtagcaaacttgaaaaagcacagtca
ttggccatccccattattaatgaagctgatttagataattatttggcgcagtag
DBGET
integrated database retrieval system
