Littorina saxatilis: 138979589
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Entry
138979589 CDS
T10665
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lsax Littorina saxatilis
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsax03036
]
138979589
03400 DNA repair and recombination proteins [BR:
lsax03400
]
138979589
Chromosome and associated proteins [BR:
lsax03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
138979589
DNA repair and recombination proteins [BR:
lsax03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
138979589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_6th
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_4th
Ig_SMCHD1_7th
Ig_SMCHD1_2nd
HATPase_c_3
SMC_hinge
HATPase_c
Bactofilin
SPAM
Motif
Other DBs
NCBI-GeneID:
138979589
NCBI-ProteinID:
XP_070208400
LinkDB
All DBs
Position
LG11:complement(43356148..43496726)
Genome browser
AA seq
2534 aa
AA seq
DB search
MAAPRRTSEDEDAFVFVYDRRTSNAPELQIPTGGLFTFADFKARVSSALKISESESFVIA
TTNRDEINNDDSWDLIDKGDTLYVLKNLSQELCAPAEERVNYLPHYDTIVKGGMYEYYAS
EGQNPLPYAFAELIDNSLAATAQNEGSRDVEIRLHFDDSAPQRSCVVVIDNGKGMNPRQL
NNWAIYRLSKFIRREKQFKGEGSADQSLDESGDTTLPDSPVARYMNSDISYFGVGGKQAI
FFIGSSTRMISKPKGSFDVHELVISKDEFEKREKNNQSIYSGVIHNRKPGDASHLGVEEE
VAARLIAEEKDRESFTAVVINNLNPSHIPYLKQHYRIWSQQLSHIYHFYLHGPDGNVDVE
GKSPNTDMDNIQIMVKLFTRGQATPTRIINLRAIEEDMQTLFARSAASTFEFKAIVDGSS
AVEGLLRYHPFLYDRETFPSDAFDPRMDPEPEDDHGYAINEQRARGKRPVFECFWNGRLI
PYTLIEDFDWCRLPKKNRSLPVECYNRISGVLWTNDTFQVSTNKLTFLDLEMKLRDKNTA
FTRVVKGHDKRTLIDKEFTSWLKECHEKHDKQIFFSVFKGVKSRTDLPRQRQFPWSFYEQ
VEWDGRVFTKGQMVKISRASAPLYGTIQCFMLNGDYEGDVFSTGGEVQITQEPVLLYDEK
KVVPLSKLDRTASQTTIKYYIEEEMAKLPSHLVVTWPNGMEVVHNEKRPAGKTIGDIKVE
ISNRKGELISKLPGAAAKKLLIELKVIWHSPQGDEVIVSHLSQHGKNWPYWFRKMENMKN
LGSHTIQLQTVLNETGASTYAGHPLPASKINFSISEGEAERFTIGVLEGPFKVAVPFNIP
LEFGDKYRNPTKPPAKLKPLLTAEGLELSYEGVQARGNTLFVKNVTAKGTVPTNAGKNYS
LTIGVDDMKETHTLKMRLLPGPPATLEVTPKEEVTVENGSALRYNITIFDAANNPTGDGR
QVVNAWFPDSPGISMCTVNTSNTGSAVLTTAPIAIKKLTANTAITARFELQNQKGVPSVE
RKVCVQPSGHATALQVFRQSDDGKPVMIENDTEISATAGEQIRGLTFKLLDEGDQEVSVS
EKIAGKVKVNWVPKPSVDLLVKGQLPDIKAPTSTRDTKYCHLSYLDGSAVEIHFSVRAEA
GEPARLICQVNGATQAEPGEVMPATISVSLADAYGNLVKIPNSAVKDFQVTSEDLVKKSL
KLSVKENVLHIQNVKFDTKRVGVHRLTVSCKDMTETIPFEVTAGPPTALDMPDWDSELPV
TVYTEDKLPFPVMAQLMDASGSPSCTPDIRVHITKDPKIKLIPAPQPIKTNSEGVADFGI
MSVSGPTGVYEFQAKATINRTVLSGPKIRVSVQPDPMKPRELTVDHSKNASFIAGQKMPG
VQRSDVRSDKRHLGLDGKEWLRNFFASSTPAFVRRLPEFGGTFPDSPGISMCTVNTSNTG
SAVLTTAPIAIKKLTANTAITARFELQNQKGVPSVERKVCVQPSGHATALQVFRQSDDGK
PVMIENDTEISATAGEQIRGLTFKLLDEGDQEVSVSEKIASKVKVSVGVQIAGKVKVSVG
VQIAGKVKVSVGVQIAGKVKVSVGVQIAGKVKVNWVPKPSVDLLVKGQLPDIKAPTSTRD
TKYCHLSYLDGSAVEIHFSVRAEAGEPARLICQVNGATQAEPGEVMPATISVSLADAYGN
LVKIPNSAVKDFQVTSEDLVKKSLKLSVKENVLHIQNVKFDTKRVGVHRLTVSCKDMTET
IPFEVTAGPPTALDMPDWDSELPVTVYTEDKLPFPVMAQLMDASGSPSCTPDIRVHITKD
PKIKLIPAPQPIKTNSEGVADFGIMSVSGPTGVYEFQAKATINRTVLSGPKIRVSVQPDP
MKPRELTVDHSKNASFIAGQKMPEFTVRVIAEDDSMLNTTDASHLSMKMWKADSIKHNTP
PARALSLSPDTPNKSSAGVFTFRNHIAPTKAGAYNVMFVFFDKKNEVYSSVVPVTVAPGP
AASLVPGEPPGVPTVSNTRSAASRCLIRFLKLHLQDKHGNPVEDGYNGEVVATVTGPAGG
GEVPVLIGGVRFVTVTMRKGQATLQQVTIQENSPGKDGMEYRLSCKVTCPLVTKNQSVPA
YDIPFLFYNDAKKQSQMAALSRERETLQNTIQAYKTMFNTQKSLIDELRTSVHEAAREEQ
GLRAELRKQSIPGAQLQDVDSVEKLIALRIKERDQILNKPRRACGLTPAPSEPDVLGKIG
QLAMIENTDISRVISWHMSADMDCVVTLTTKKAQEIYSKTQGRQQVLPLDSIYRKNLPDW
GKPLPHVRYRPSWKPPGRPVYARDLMLFPVEQNSCQLVFGMLLGDTLILDNLTNANAYRQ
EIIKHSHCPTILTWQGDRIRSNGKFGGTMNKAVSLEKLRGAVFGEPLPMSYHALCTQITC
LEQYKMALTQHMTAQEELQDVIVSQKNGDMTAKHRECQEAEKQLADVERQLGVGVPSKSR
TTASTPVRENGGPSPSKRSRTSAGGGAASSPLLPSALNSSSDNDLSNTPSRTSLRIRSMT
TVVSDDGRKRLRKT
NT seq
7605 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcccaggcggacctcggaagacgaggatgcctttgtttttgtctatgacagg
cgtacttctaatgcaccagagttacaaataccaaccggaggtctttttacgtttgccgat
ttcaaagcaagagtttcttctgcattgaaaatttcagagtctgaatccttcgtgatcgcc
acaaccaaccgagatgaaatcaacaatgacgactcttgggatctcattgacaaaggggac
acactgtatgtgctcaagaacctgtcacaggagttgtgtgcccctgcggaggagcgggtc
aactacttgcctcactatgacaccatcgtcaaaggagggatgtacgagtattacgcctca
gaaggacagaacccgctgccatatgcttttgcggagctgatcgacaattctctggctgcc
accgctcagaatgaaggatctcgggacgtggaaatcagactgcactttgatgactcggca
ccacagcgtagctgcgtggttgtcattgacaacgggaaagggatgaacccacggcagctc
aacaactgggccatctacaggctgtccaagttcatcagacgagagaagcagttcaaaggg
gagggctcagctgaccagtcgctggatgaatcaggggacaccactctgcccgactccccg
gtggcccgctacatgaacagcgacatttcctacttcggtgtgggcggcaagcaggccatc
ttcttcatcggcagttccacaaggatgatcagcaaacccaaagggtcgttcgacgtgcac
gagctggtcatctccaaggacgagtttgagaagagagagaagaacaaccagtccatctac
agcggtgtcatccacaacaggaagcccggagacgcatcccacctcggtgtggaggaagag
gtcgcggcacgtctgattgccgaggagaaagatcgcgagtctttcacggccgtggtgatc
aacaacctcaacccctcacacatcccctacctcaaacagcactaccgcatctggtcacaa
cagttgtcacatatctaccacttctacctgcacggaccggacggcaatgtggatgtggaa
ggaaagtcgcccaacacagacatggacaacatccaaatcatggtcaagctgttcactaga
ggtcaggccactccaacacgcatcatcaacctgcgagccatcgaggaagatatgcagacg
ctgtttgcaaggtcggcagccagcacctttgagttcaaggccatcgtggatgggtcgagt
gcggtggaggggttgctgaggtatcacccgtttctctacgaccgagagaccttcccttcc
gacgccttcgatcccagaatggaccctgagccagaggacgaccatggctacgctatcaac
gagcagcgagcgcgaggcaagcgccccgtcttcgagtgcttctggaacggccgtctcatt
ccatacacgctcattgaagactttgactggtgccgtctgcccaagaagaacaggagtctg
ccggtggagtgctacaacagaatatcgggcgtactgtggaccaacgacacattccaggtc
agcaccaacaagctgaccttcctcgaccttgagatgaagctacgagacaagaacaccgcc
ttcactcgcgttgtcaaaggacatgacaagcgcacgctgatcgacaaagaattcacgtcg
tggttgaaggaatgccacgagaagcacgacaagcagatcttcttctccgtcttcaagggt
gtcaagtcgcgcactgacctccctcgtcagcgacagttcccctggtccttctacgagcag
gtcgagtgggacggcagggtcttcaccaaaggacagatggtcaagatctccagagcatca
gcccccctttacggcaccatccagtgcttcatgctcaacggagactacgaaggggacgtc
ttttctacaggtggtgaagtgcagattacacaggagccggtgctgctgtatgatgagaag
aaagtggtgcctctctccaagctggaccgcacagcatcccagactaccatcaagtactac
atcgaggaggagatggcaaagttacccagccacctggtggtcacatggcccaatgggatg
gaagtcgtgcacaacgagaaacgtcccgctggaaagaccattggtgacatcaaagtggaa
atctccaacaggaagggggaactcatctccaagctgcccggagccgccgccaagaaactg
ctcatagaactcaaggtcatctggcattccccacagggagacgaggtgattgtgtcgcac
ctgtcacagcacggcaagaactggccctactggttccgcaagatggagaacatgaagaac
ctgggcagtcacaccatccaactgcagaccgtgctgaacgagacaggcgccagcacctac
gccggtcaccccctgcccgcaagcaaaatcaacttctccatctcagagggggaggcggag
cggttcaccatcggggtgctggaaggaccgttcaaggtcgcagtgcccttcaacattccc
ctggagtttggggacaagtaccgcaaccccaccaagccccctgccaagctgaagccactg
ctgactgctgaggggttggagctgtcgtacgagggagtgcaagccagaggcaacacgctg
ttcgtcaaaaacgtcacagccaagggcacagtacccacaaacgctggaaagaactacagt
ctgaccattggtgtggacgacatgaaggagacgcacaccttgaagatgcgactgctgcca
ggtcccccggccaccctggaggtgacgcccaaggaggaggtgacggtggagaacgggagt
gcgctgcgctacaacatcaccatctttgacgctgccaacaaccccacaggggacggtcgt
caagtggtcaacgcttggtttccggacagtcctgggatttccatgtgtacggtcaacact
agcaacacggggtcagccgtcctgaccaccgcccccatcgccatcaagaaactgaccgct
aacaccgccatcaccgccaggtttgaactgcagaaccagaagggagtcccgtcagtggag
agaaaagtgtgtgtacagcccagcggtcatgcgacggctctacaagtgttccgccagtcg
gacgacggaaagcccgtcatgattgaaaacgacacagaaatcagcgccaccgctggggaa
caaatcagaggactcactttcaagttgctggatgaaggtgaccaagaagtgagcgtcagt
gagaagatagccggcaaagtgaaggtgaactgggtgcccaagccgagtgtcgacctgctg
gtcaagggtcagctgccggacatcaaggcccccacctccacccgtgacaccaagtactgc
cacctgtcttacctggacgggtcagccgtggagatacacttctctgtcagggccgaggca
ggagagccagcgcgtctcatctgtcaggtgaacggagccacacaggcagagccaggggag
gttatgcccgcaaccatcagcgtctcactcgccgacgcatacggcaaccttgtcaagatc
cccaactcggcagtgaaagacttccaggtgacgtcagaagatctggtcaaaaagtcgctc
aagttgtcagtcaaagagaacgtgctacacattcagaacgtgaagtttgacacgaagcgt
gttggcgtgcacagactgaccgtctcctgcaaggacatgacagagaccattccctttgaa
gtgaccgccggcccaccaaccgccctcgatatgcccgactgggactcagaactgccggta
acagtgtacacagaagacaaactgccgttccctgtcatggcacagctgatggacgcaagc
ggcagtccctcctgtactcccgacatccgcgttcacatcacaaaagaccccaagatcaag
ctgattccggctccccagcccatcaagacaaacagtgagggcgtggccgactttggcatc
atgtctgtgtccggacccacaggtgtgtacgagtttcaagccaaggcgaccatcaaccgc
acggtgctgtcaggtcccaagatccgtgtgtcggtccagcccgaccccatgaagccacga
gaactgaccgtagaccacagcaagaatgcttcctttattgccggacaaaaaatgcctggt
gtccagcgcagtgatgtgcgcagtgataaacggcatttaggacttgacgggaaggagtgg
ctgaggaatttttttgcctcgtccacccctgcctttgttcgacgacttccggagttcgga
ggaacatttccggacagtcctgggatttccatgtgtacggtcaacactagcaacacgggg
tcagccgtcctgaccaccgcccccatcgccatcaagaaactgaccgcaaacaccgccatc
accgccaggtttgaactgcagaaccagaagggagtcccgtcagtggagagaaaagtgtgt
gtacagcccagcggtcatgcgacggctctacaagtgttccgccagtcggacgacggaaag
cccgtcatgattgaaaacgacacagaaatcagcgccaccgctggggaacaaatcagagga
ctcactttcaagttgctggatgaaggtgaccaagaagtgagcgtcagtgagaagatagcc
agcaaagtgaaggtcagtgtaggtgtgcaaatagccggcaaagtgaaggtcagtgtaggt
gtgcaaatagccggcaaagtgaaggtcagtgtaggtgtgcagatagccggcaaagtgaag
gtcagtgtaggtgtgcaaatagccggcaaagtgaaggtgaactgggtgcccaagccgagt
gtcgacctgctggtcaagggtcagctgccggacatcaaggcccccacctccacccgtgac
accaagtactgccacctgtcttacctggacgggtcagccgtggagatacacttctctgtc
agggccgaggcaggagagccagcgcgtctcatctgtcaggtgaacggagccacacaggca
gagccaggggaggtcatgcccgcaaccatcagcgtctctctcgccgatgcctacggcaac
cttgtcaagatccccaactcggcagtgaaagacttccaggtgacgtcagaagatctggtc
aaaaagtcgctcaagttgtcagtcaaagagaacgtgctacacattcagaacgtgaagttt
gacacgaagcgtgttggcgtgcacagactgaccgtctcctgcaaggacatgacagagacc
attccctttgaagtgaccgccggcccaccaaccgccctcgatatgcccgactgggactca
gaactgccggtaacagtgtacacagaagacaaactgccgttccctgtcatggcacagctg
atggacgcaagcggcagtccctcctgtactcccgacatccgcgttcacatcacgaaagac
cccaagatcaagctgattccggctccccagcccatcaagacaaacagtgagggcgtggcc
gactttggcatcatgtctgtgtccggacccacaggtgtgtacgagtttcaagccaaggcg
accatcaaccgcacggtgctgtcaggtcccaagatccgtgtgtcggtccagcccgacccc
atgaagccacgagaactgaccgtagaccacagcaagaatgcttcctttattgccggacaa
aaaatgcctgaattcacagtgagggtgattgcggaggatgactccatgctcaacacaacg
gacgcctcacacctctccatgaagatgtggaaagccgacagtattaaacacaacacaccg
cccgctagggcgttgtccttgagccctgacacacccaacaagtcttccgctggtgtcttc
acgttcagaaaccacatcgcccccaccaaggctggcgcatacaacgtcatgtttgtcttc
tttgacaagaagaatgaagtctacagcagtgtggtgcctgtgacagtagcaccgggccca
gcagccagcctggtaccaggtgagccaccaggtgtccccaccgtctccaacacgcgcagt
gcagccagtcggtgcctcatccgcttcctcaaactacacctacaggacaaacacggcaac
ccagtggaggacggctacaatggtgaggtggttgccacggtgacggggccagctggcggc
ggtgaggtccccgtcttgatcggtggggtgcgctttgtcaccgtcaccatgaggaagggg
caggccactctgcagcaagtgacgattcaggagaactctccgggcaaggacggcatggag
tacaggctgagctgtaaggtgacctgccccctcgtcaccaagaaccagagtgttcccgcc
tacgacattccattcctcttttataatgacgccaagaagcagtcccagatggcagcactg
tccagggagagagagacgctgcagaacaccatacaggcctacaagacaatgttcaacacg
cagaaatcactcatcgatgaacttaggacgtcggtgcacgaggcagccagggaggagcag
ggactgagggccgagctgaggaaacagagcatacccggcgcacagctgcaggacgtggac
tcagtggagaaactgatagcgctgagaatcaaggagcgagaccagatcctcaacaagccg
cgccgagcgtgtggcctcactcccgctcccagcgaacccgatgtcctgggaaagattggc
cagctggccatgattgagaacacggacatttcgcgtgtcatctcgtggcacatgtcagct
gacatggactgtgtcgtcaccctcaccaccaagaaggcccaggagatctacagcaagact
caggggagacaacaagtgctgcctctcgactccatctaccgcaaaaacctgcctgactgg
gggaagccgttgccccatgtacggtatcgacccagctggaagccgcccggtcgtccagtg
tacgcacgagacttgatgctcttccctgtggaacagaacagctgtcagctggtgtttggc
atgctgctaggcgacaccctgatcctggacaacctgaccaacgcaaacgcctacagacag
gagatcatcaagcacagccactgtcccacaatcctcacgtggcagggagacaggattcgt
agcaacggaaagttcggcggcaccatgaacaaagccgtctccctggagaaactgagggga
gccgtgttcggtgaacctctccccatgtcctaccatgccctgtgcacacagatcacgtgc
ctggagcagtacaagatggcgctgacgcagcacatgacggcgcaggaagagctgcaggac
gtgatcgtgtcgcagaagaacggtgacatgaccgccaagcacagagagtgtcaggaggct
gagaagcagctggctgacgtggagaggcagctaggtgtcggcgttccgtccaaatccaga
actacagcgtcgaccccagtacgtgaaaacggcggcccttcgccgtcgaagcgttcacgc
acgtctgcagggggtggggccgcctcctcccccctccttccctcggcgctgaacagcagc
agtgacaacgacctctccaacacccccagcaggaccagtctccgcatcaggtccatgacc
accgtcgtgtcggacgacggcaggaagagactgaggaagacatga
DBGET
integrated database retrieval system
