Leptodesmis sichuanensis: KIK02_05765
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Entry
KIK02_05765 CDS
T07779
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lsc
Leptodesmis sichuanensis
Pathway
lsc03030
DNA replication
lsc03410
Base excision repair
lsc03420
Nucleotide excision repair
lsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KIK02_05765 (ligA)
03410 Base excision repair
KIK02_05765 (ligA)
03420 Nucleotide excision repair
KIK02_05765 (ligA)
03430 Mismatch repair
KIK02_05765 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsc03032
]
KIK02_05765 (ligA)
03400 DNA repair and recombination proteins [BR:
lsc03400
]
KIK02_05765 (ligA)
Enzymes [BR:
lsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KIK02_05765 (ligA)
DNA replication proteins [BR:
lsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KIK02_05765 (ligA)
DNA repair and recombination proteins [BR:
lsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KIK02_05765 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KIK02_05765 (ligA)
MMR (mismatch excision repair)
DNA ligase
KIK02_05765 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KIK02_05765 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UIE39097
LinkDB
All DBs
Position
1203699..1205948
Genome browser
AA seq
749 aa
AA seq
DB search
MDSAEQLSFLNQDQEHSTATLQRLQELRQLVQKASYAYYVLDEPIMEDSVYDQLYHELVD
LETRYPELITPDSPTQRIGERPASQFTSVRHNIPLYSLENAFSNEDLIKWEERWKRQLKS
SEFSVLSSQLEDPPQAGSSELSGLRSQVDASSTQNAERKTQNSPFSYVCELKIDGSALAL
TYENGFLVRGATRGDGVEGEDITQNVKTIRSIPLRLNLENPPAIVEVRGEAFLPLSSFEQ
LNQEREQAGEPLFANPRNAAAGTLRQLDSKIVAKRKLDFFAYTLHLGGEGGGGGEEDGAG
GGEIQNLKSQIQNPTTQWEVLQTLKQLGFRVNPEGALCQNLQEVIAYCDRWSTERTRLRY
MTDGVVVKLNSLKLQELLGFTQKFPRWAIALKYPAEEAPTVVERISVNVGRTGAVTPLAE
MRPVRLAGTTVSRATLHNRDRIAELDIRVGDTVIIRKAGEIIPEVVRVLYELRPEGTEPY
QMPTHCPECHQPLVKPEDEAVTRCINASCPAIVRAELVHWAARDAMDINGLGEKLVLQFV
DTGLVKSIADLYDITVEQLMTLERMGKKSAEKLVKAIADSKQQPWSRVLYGLGIRHVGSV
NAQVLTEAFPSVDALMQATVEDIAAVYGIGHTIAESIYQWFQNPANHELIDRLKAAGLTF
HSTPTAHSPRPTPLTGKTFVLTGTLPTLKRDDAKALIQKAGGKVTDSVSKKTDYVVAGAE
AGSKLEKAQTLGIPILSEAELLNLLAESD
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggattcggcagaacagctttcctttctgaatcaggatcaggaacactcaaccgccacc
ctacagcggcttcaggaattgcggcaattggtgcaaaaagctagctatgcctactatgtc
ctggacgagccaatcatggaggatagtgtctacgaccagctttatcacgaactggtagac
ctggaaacccgctacccggaactaattacccccgacagtcctactcaacgaatcggtgaa
cgtcccgccagccaatttacctctgttcggcacaatattcccctttacagcctggagaac
gcctttagcaacgaagacctgatcaagtgggaagagcgctggaaacgacagctaaagagt
tctgagttctcagttttgagttctcagttagaagacccgccccaagcagggagttcagag
ctttcaggtttaaggtctcaggtagacgcatcttcaactcaaaacgcagaacggaaaact
caaaactctcctttctcctacgtctgcgaacttaaaattgatggttccgccctggctctg
acctatgaaaatggttttctggttcgcggggcgactcgtggggatggggtagaaggagaa
gacattactcagaacgtgaaaaccattcgctccattcctctgcgactgaatttggagaat
ccacctgcgatcgtggaagtacgcggcgaagcctttctacccctgtcatcctttgagcag
cttaatcaggaacgggagcaggccggagaaccgctgttcgccaatcctcgcaatgccgca
gcaggaaccctccgccaattggattccaaaattgttgctaaacgcaagttggactttttt
gcttataccctgcacttgggcggtgagggaggtgggggaggtgaggaagatggggcaggt
gggggagaaatccaaaatctaaaatcccaaatccaaaatcccaccacccaatgggaagta
ctccaaaccttgaaacaattgggcttccgcgtcaatccagaaggggcgctgtgccagaat
ttgcaggaggtgattgcctactgcgatcgctggtctactgaacggactcgcctgcgctac
atgacggatggtgtcgtcgtgaagttaaattccttgaaattacaggaactgttgggcttt
acgcaaaaatttccccgctgggcgatcgcgctcaagtatccggcagaagaagcccccacg
gtggtggagcgaatcagtgtgaatgtggggcgaaccggagcggtgaccccgctggcagaa
atgcgtccggtacggttggcaggcacaacggtctcacgggcgactttgcacaatcgcgat
cggattgccgaactggatattcgagtgggagatacagtgattattcgcaaagcaggagag
atcattccggaagtggtgcgtgtgctgtacgagttgcgtccggagggcactgagccgtat
cagatgcccacccactgtccggagtgtcatcaacccctggtcaagccagaggatgaagcc
gtgactcgctgtattaatgcctcctgtcccgcgatcgtgcgggcagagttggtgcattgg
gccgctcgcgatgcaatggacattaatggactgggtgaaaaattagtgctgcaatttgtc
gataccggattggtgaaatcgatcgcagatctgtacgacattacggtggaacaattaatg
actctagaacgcatgggcaaaaagtctgctgaaaaattggtgaaagcgatcgccgactcc
aaacagcaaccctggtcacgagtcctgtatggattgggaattcggcatgttggcagcgtc
aatgctcaagtcctcaccgaagcctttcccagtgtggatgccctgatgcaggcaacggtg
gaagatattgctgccgtgtatggcatcggccataccatcgccgagtccatctaccaatgg
ttccaaaatcccgccaatcacgaattgatcgatcgcctgaaagccgctggcctcaccttc
cactccacccccacagcccacagcccacgccccacccccctaactggcaaaaccttcgtc
ctgaccggtacccttcctaccctcaaacgcgacgatgccaaagccttaatccaaaaagca
gggggcaaagtgacagactctgtgagcaaaaagactgattatgttgtagcgggagcagaa
gcaggttccaaactggaaaaggcgcagacgttaggaattccaattttgtcagaagcagaa
ttactgaaccttcttgctgagtcggattag
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