Listeria seeligeri: lse_1730
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Entry
lse_1730 CDS
T01184
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lsg
Listeria seeligeri
Pathway
lsg03030
DNA replication
lsg03410
Base excision repair
lsg03420
Nucleotide excision repair
lsg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
lse_1730 (ligA)
03410 Base excision repair
lse_1730 (ligA)
03420 Nucleotide excision repair
lse_1730 (ligA)
03430 Mismatch repair
lse_1730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsg03032
]
lse_1730 (ligA)
03400 DNA repair and recombination proteins [BR:
lsg03400
]
lse_1730 (ligA)
Enzymes [BR:
lsg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
lse_1730 (ligA)
DNA replication proteins [BR:
lsg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
lse_1730 (ligA)
DNA repair and recombination proteins [BR:
lsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
lse_1730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
lse_1730 (ligA)
MMR (mismatch excision repair)
DNA ligase
lse_1730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
lse_1730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
RNA_pol_A_CTD
Zn_ribbon_NUD
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
CBH27881
LinkDB
All DBs
Position
complement(1777117..1779132)
Genome browser
AA seq
671 aa
AA seq
DB search
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVTPESPSKR
VGGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRIRDKVGEDIAYMCELKIDGLAVSL
QYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSDGLDMLE
TLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMGTTAKSP
RWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPTCGSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFTHHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEQSKQNSLEKLLFGLGIRHVGAKAAKSLAIHFETMDNLKLADKETLTS
INDIGEKMADSIVTYFANEEVHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLT
GKLEQLTRNDAKSLIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLI
EYLPDEGGLNK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaaacggtatgaagagctaattaacatacttgatcaatacagctatgat
tattatgtgattgataacccgacagtagaagatgccgaatacgatcaaaaaatgcaagaa
ttacttcaaatcgaagcagcgcatccggaatgggttacacctgaatctccgtcaaaacga
gttggtggtgaagtgttagaaggttttcaaaaagtagcgcatgacacgccgatgttaagc
ctcgccaatgcatttaataaaggcgacctagctgattttgatcggcgcatccgggataaa
gtaggcgaagatatcgcttatatgtgcgaactgaaaattgatggacttgctgtatcactt
caatacgaaaaaggtaaatataagcaaggggcaacacgtggtgacggaacaactggcgaa
gatattaccgcaaatctacgtacaattcgctccattccaatgaaattacaaaaagactat
tccattgaagttcgcggcgaggctttcatgccaaaacgctctttccaaaaactaaatgaa
attcgcgaagaagaaggccagatgctattcgcaaatccgcgaaatgcagcggctggatca
ttgcgtcaattagataccaaaattgccgcatctagaaatttagatatcttcctatatgct
gtagctgattttggcgaaatgggtgttacaactcatagtgacggccttgatatgctagaa
acacttggtttaaaagtgaataaagagcgcagactttgtgctaatttggaggaagtttac
gcttatattgatgaatggaccgaaaaaagagcaggtttagcatatgatattgatggtatt
gtgttgaaactaaatgatctagagcaacagcgccaaatggggacaaccgctaagtcacca
cgctggtctatcgcttacaagtttccagcagaagaagtaccaaccaaattacttgatatt
gaactaaacattggtagaacaggtgttgtaactcccactgctgtgttagaaccagttcga
gtggctggaacaaccgttagccgggcctctctccataacgaagacctaataacagaaaaa
gatattcgcattggggataccgttttaataaaaaaagcgggagacatcattccagaagtt
attaaaagtattaccgaagaaagaactggcgaagaagaaccttttcatatgccaaaaaac
tgtcccacttgtgggagcgaacttgttcgtttagaagaagaagtggcgctcaggtgtatc
aatccgaaatgtccagctcaaatcaaagaaggcctaattcactttgtttctcgaaatgca
atgaatattgatggactcggtgaaaaagtaataattcaactgtttacacaccatttaatt
aaagatgtagcagatttgtttttcctttcgaaagagaaactgttagaattagaaagaatg
ggagaaaagtcagtaacgaatttactcgcatcaattgaacaaagtaaacaaaactcgcta
gaaaaattattatttggtttaggaattcgtcacgttggcgccaaagcagccaaatcactt
gcgattcactttgaaacaatggataatttgaaactagcggataaagaaacactcacaagc
attaatgatatcggcgaaaaaatggcagacagcatcgtaacttattttgcgaatgaagaa
gttcatgacttactagatgaactaaaaagggctaacgtcaatatgacttacacaggacca
aaactagaaaatatgtccgaagaagaacttatttttgcagggaaaacagtcgtattaact
gggaaattagaacagttaacgcggaatgatgcaaaatcgttaattgagtcacttggcgga
aacgtttctgggagcgtcagtaaaaagacggatgttgttgtagctggcagtgacgctggt
tctaaactcgctaaagcagaagaactagcaattcctatttggtccgaaaacgacttaata
gagtacttaccagacgaaggtggattaaacaaatga
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