Legionella sainthelensi: CAB17_12190
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Entry
CAB17_12190 CDS
T05293
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lsh
Legionella sainthelensi
Pathway
lsh03030
DNA replication
lsh03410
Base excision repair
lsh03420
Nucleotide excision repair
lsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAB17_12190 (ligA)
03410 Base excision repair
CAB17_12190 (ligA)
03420 Nucleotide excision repair
CAB17_12190 (ligA)
03430 Mismatch repair
CAB17_12190 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsh03032
]
CAB17_12190 (ligA)
03400 DNA repair and recombination proteins [BR:
lsh03400
]
CAB17_12190 (ligA)
Enzymes [BR:
lsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CAB17_12190 (ligA)
DNA replication proteins [BR:
lsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAB17_12190 (ligA)
DNA repair and recombination proteins [BR:
lsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CAB17_12190 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAB17_12190 (ligA)
MMR (mismatch excision repair)
DNA ligase
CAB17_12190 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CAB17_12190 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DUF4874
DUF3217
Motif
Other DBs
NCBI-ProteinID:
AUH72722
UniProt:
A0A2H5FMF4
LinkDB
All DBs
Position
1263923..1265938
Genome browser
AA seq
671 aa
AA seq
DB search
MVIDEIKEHMAKLKDKIRQYDYHYYVLDDPLVPDVEYDRCFRALLDLETKHPELLTADSP
TQRVGGTPADAFAPVTHRQPMLSLSNVFSEDELQAFIKRVTEKLDEPVLQLVFTCEPKLD
GLAVNITYENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRTNQPPRFIEIRGEVYMP
KAGFEEYNKKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDYRLPS
THWEQLELIKEFGFKVSSESKREVGIKGCLDYYRNMLAKREQLPFEIDGVVYKVDSIALQ
QQLGFISRAPRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTVSNAT
LHNMDEITRKDIRIGDKVIIRRAGDVIPEVVSVVLEQRPTDTKEICLPLKCPVCDSDVVR
EEGEAVARCIGGLFCKAQLKRMMWHFASRKAMHIEGLGSVLIEQLVDEGIVRHLPDLYRL
DVSTLANLPRMGEKSAKNLLQALEQSKKTTLSRFLYALGIREIGEASARVLAEHFGDIEA
ISNATVDELMNLEDMGPVGAGNIVHFFAQTHNLEVIQHLLELGVYWPKIEKKQQNTEHPL
FGKTVVLTGTLNTLSREEAKAKLLILGAKVSGSVSAKTDYVIAGTEAGSKLDKANNLGIS
ILDEEQFLHML
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggttattgatgaaataaaagaacacatggctaagctaaaagataagataaggcagtat
gattatcattattatgtactggatgatcctttagtgcccgatgttgagtatgatcgatgt
tttcgtgcgttactcgatttagaaaccaagcatcctgaattattgactgctgattcacca
acacaacgtgttggtggtacgcctgcagatgcttttgcacccgtaactcacagacaacct
atgttgtccttgtcaaacgttttcagcgaagatgaactacaggcatttattaaacgagtc
actgaaaaattagatgagccagtcctgcaattagtttttacgtgtgagccaaaattagat
ggtcttgctgtaaatattacttatgaaaatggagtattggtttatgcagctactcgcggg
gatgggactacaggtgaaaacattactgccaacattaaaacgattgcggcaataccatta
gttttaagaaccaatcagccaccacgttttattgaaatacgtggcgaagtatatatgcca
aaagcaggctttgaggaatacaataaaaaagccaaagagttgggtgaaaaaacctttgca
aatccacgtaatgcagcagcaggaagtttacggcaattgaatcctgcagtaacagcaaat
agaccactagcgatttattgttatggtattggtgcttgtgaagattatcgtttaccaagc
acgcattgggagcaattggaattaataaaagagtttggttttaaggtttcctctgaatca
aaaagggaggtaggaattaaaggttgtttggattattaccgcaatatgctcgctaagcga
gagcaacttcctttcgaaatcgatggtgttgtttataaagttgacagtattgctttgcaa
cagcaattgggttttatttcgagggctccacgttttgcttgtgcgcataaatttccagct
actgaagaaataaccgaaattttagcagttgattttcaagtgggtagaacaggggcttta
actcctgtagctcgtttagccccagtgaatgttgctggagttactgtgagcaatgctacc
ttacataatatggatgaaattaccagaaaagatattcgaataggggataaagtgataatc
cgtcgcgctggtgatgtgattcctgaggtggtttcggttgttttagaacaacgaccaaca
gatactaaggagatttgtttacccctaaaatgtcctgtttgtgattctgatgtcgttcgt
gaagaaggggaggcggttgctcggtgtattggtggtttgttttgcaaggctcaattaaaa
agaatgatgtggcatttcgcttcacgtaaagcaatgcatattgaaggattaggttctgtt
ttaattgaacaattggttgatgaaggtattgtacggcatctccctgatctttataggctt
gatgtttctacattggctaatctcccccgtatgggcgagaagtctgcaaaaaacttgttg
caagctttagaacagagtaaaaagactacattaagtcgttttctttatgctttaggaatt
cgcgaaattggtgaggcaagtgcccgggtgttagcagagcattttggagatattgaagca
atttcaaatgcaacagttgacgaactcatgaatttggaagatatggggcctgttggagca
ggaaatatagtacatttttttgcacaaacccataacctggaagtgattcaacatttgtta
gaacttggtgtttactggccaaaaattgagaaaaaacaacagaatacggagcatccttta
tttggaaaaacagtggtgctcactggaaccttaaatacactgagtcgcgaagaggctaaa
gcgaaattactcatcttgggtgctaaagtaagtggtagcgtatcggcaaaaacagattat
gtaattgctggtactgaagcagggtcaaagcttgataaagcaaataatttagggatttcc
attttagatgaagaacaatttcttcatatgttataa
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