Leptidea sinapis (Wood White): 126977228
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Entry
126977228 CDS
T09272
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126977228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsin03400
]
126977228
Enzymes [BR:
lsin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126977228
DNA repair and recombination proteins [BR:
lsin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126977228
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT
BRCT_2
DNA_ligase_IV
DUF6824
Motif
Other DBs
NCBI-GeneID:
126977228
NCBI-ProteinID:
XP_050681911
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All DBs
Position
44:6335990..6370743
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AA seq
883 aa
AA seq
DB search
MEATPANNIKFSDLCSVLQQIHKNKKNRHEQDKIVTNFVNDFRLNSGAFIEKKNSTFYPV
MRLLLPDRDRERGAYNLKEAKLGALLVKVLSLNKQSQDAQKLLNFRSVQSNTHESDFANV
AYFIFRNRIQNVGNLTIGDVNAILDKISAAEVGSKGFILDEAFSYAIKNMSAEQFKWFLR
IILKDLKLKMGIHRILAAFHPDAPELFDSCANLSKVCEDLEDGDTRPLELGVKVFFAVSP
MLSERLDVTRIAQLSPNNTYHIEDKFDGERFQMHMENGIFEYYSRKGFRYSDSYGKTYES
GLLTPNLQSSFSSNATSFILDGEMMGWHKEYKCFGSKGMAYDIKKITENSRYRPCFCVFD
ILYYNGKSLIGPPEKGGLPLKQRLEILDLLFFNIPGVIQHSRRHIVKSNVDILNALNKAI
ENQDEGVVVKDVDSFYIANRRNAGWYKIKPEYTEGAMTDLDLVIIGADEAENKRQGRAKS
FHVACADVDSDGVTSRWVCVGRVATGFTYEERETVCAHLERYWSVSKKTSPPPCLYFNKE
KPDFWILPQHSIVLEVRATELVRSSGTGTEYTLRFPRVTNIRADKPVSDIMTLLDFQRIV
AERNPVIKLSTKRISDTQIAEAVTKSRKSRPAKTVQVAEQFRSRAADVVVTSHALKDREV
CVLSDDGDCKKTELIRIVESHGGKHVENPGPKTWCCIVGSQSFRTRRLIESNMYDVITAS
WLRSLPSSHRRCTLSPVDMLSIKKSTKLSLSIEYDKFGDSYKQPSDQDTLDKCLKKMDCE
IPTYLTRQEMIEVDAEIFGNNNPFSFLRPCLIHVIDNDVIAAKARFFGANLQNRNGNLTH
IVVPREFTDVINTKRNVHVVYEDWLEKCFEERRLCNDLPFLRN
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaactccggctaataacattaagtttagcgatttgtgttcggtgttacaacaa
atacataaaaataagaagaataggcatgaacaagacaaaattgtgactaattttgtaaat
gattttagactcaattctggagcatttatagaaaagaagaattcaacattctatccagta
atgaggctgcttctaccagaccgcgaccgggaaagaggagcctacaatttaaaagaagct
aaactgggcgcgttacttgtcaaagtattatctctgaacaaacaatctcaggatgcacaa
aagttgctcaactttcgatcagtccagagtaatacacatgagagcgattttgcgaacgtt
gcatatttcattttcaggaatagaatacaaaatgttggcaatttaacaataggagatgtc
aatgctattctcgacaaaatttctgctgctgaagtcggcagtaagggatttatactagac
gaggcttttagctatgcaataaaaaatatgtcggccgaacagttcaaatggtttctaaga
attatcctgaaggacttaaaattgaaaatggggatacataggatactagctgcattccat
ccagatgccccagagttgttcgacagttgtgcaaaccttagtaaggtttgcgaagacctt
gaagacggcgatactcgtcctttagagctaggtgttaaggtgttttttgctgtaagccca
atgctgtctgagcgacttgatgtaacacgaatagctcaactgtcccctaacaatacgtac
catattgaggacaagtttgatggcgaaagatttcagatgcacatggaaaacggaatattc
gagtattattcaagaaaaggatttcgttactcagacagctacggaaagacctacgagtct
ggtttgctgactccaaacctacagagttcgttcagttcgaatgcaaccagttttatactg
gacggagaaatgatggggtggcataaagagtataaatgcttcggttcaaaaggtatggcg
tatgatatcaagaaaataactgagaactcaagatatcgaccatgtttctgtgtttttgat
attttgtattacaatggaaagtcactgatcgggccccctgaaaagggagggctcccactt
aagcagaggctcgaaatattggacttgttattttttaatatacctggcgtcatacaacac
agtaggcgacatatcgtaaagagcaatgtggacatattgaacgctctgaacaaagctatc
gaaaaccaagacgaaggggtcgtggtgaaggacgtcgactcgttttacatcgctaaccgg
cggaacgctgggtggtacaagataaaacctgagtatacagagggcgcaatgacggaccta
gatttagttataattggagcggatgaggcggagaataagagacaaggtcgcgccaagagt
ttccatgtggcctgcgctgatgttgactcagatggtgtaacaagccgttgggtgtgcgtg
ggacgcgtcgctacggggttcacatacgaggaacgtgagacagtatgcgcacacttggag
cgatactggagtgtctctaagaagaccagtccaccgccctgtctctacttcaacaaggag
aaacctgacttctggatattaccacaacattctattgtacttgaggtacgtgctacagaa
ctagttcgcagcagtggtacgggcacggagtacacgctgcggtttcctcgcgtcaccaac
atcagagctgataagccggtttctgacatcatgacgctgctagacttccagcgtatcgtg
gctgaaagaaaccctgtgatcaagctgagcacgaaacgcataagcgacactcaaatcgcg
gaagccgtcaccaagtctcgtaaatcccgaccggccaagacagtacaagttgctgagcag
ttccgctctagagctgctgacgtagttgtgacgtcacacgccctgaaggacagggaggtg
tgtgtgctctctgacgatggagattgtaagaagacagagctaattagaattgttgaaagt
cacggcgggaagcatgtggagaatccaggtcctaaaacctggtgctgcatcgtgggttca
cagagcttccgtactcgacgccttatagaaagcaacatgtacgatgtcatcacagccagc
tggcttagatcccttccatcttctcacagacgctgcacgctatcaccggtcgacatgttg
tctataaagaaatccactaaactgtccttgagcatagagtatgataagtttggtgatagc
tacaagcaacccagcgaccaagatactttggacaagtgtttgaagaaaatggattgcgag
ataccgacctatttaacacgacaagaaatgattgaagttgatgcagaaatatttggcaat
aacaatccattttccttcctgcggccatgtttgatacatgtcatagacaatgatgtcatc
gcagcaaaagctagattttttggcgccaatctgcaaaaccgtaatggaaatttgactcat
atagttgttccacgcgaattcacagatgtaataaatactaagagaaatgttcatgtagtc
tacgaagattggttggagaaatgttttgaagagaggagattatgtaacgacttgccattt
ttacgcaactga
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