Leptothermofonsia sichuanensis: J5X98_23000
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Entry
J5X98_23000 CDS
T07904
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lsk
Leptothermofonsia sichuanensis
Pathway
lsk03030
DNA replication
lsk03410
Base excision repair
lsk03420
Nucleotide excision repair
lsk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5X98_23000 (ligA)
03410 Base excision repair
J5X98_23000 (ligA)
03420 Nucleotide excision repair
J5X98_23000 (ligA)
03430 Mismatch repair
J5X98_23000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsk03032
]
J5X98_23000 (ligA)
03400 DNA repair and recombination proteins [BR:
lsk03400
]
J5X98_23000 (ligA)
Enzymes [BR:
lsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J5X98_23000 (ligA)
DNA replication proteins [BR:
lsk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J5X98_23000 (ligA)
DNA repair and recombination proteins [BR:
lsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J5X98_23000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5X98_23000 (ligA)
MMR (mismatch excision repair)
DNA ligase
J5X98_23000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J5X98_23000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
zf-ribbon_3
RNA_pol_A_CTD
Auto_anti-p27
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QZZ20114
LinkDB
All DBs
Position
complement(5326505..5328661)
Genome browser
AA seq
718 aa
AA seq
DB search
MDAIGAALSENQQRVKELRQLLQKASYAYYVLDSPIMEDSVYDQLYHELLALETDFPELI
TPDSPTQRVGEKPASQFHSVRHNIPLYSLENAFDSADLVKWQERWRRVAPDIHEFEYVCE
LKIDGSALALTYENGLLVRGVTRGDGITGEDITQNVKTIRSIPLRLELDDPPPTVEVRGE
AFLPLSSFETINQEREQAGEPPFANPRNAAAGTLRQLDSRIVAKRKLDFFAYTLHIPVGG
SRQSAVSEGEVQLDLLSNSADVESEHIPVPNARYPIPQTQWECLELLQDMGFKVNPERSL
CSNLEEVQEYCNRWLTERHNLPYMTDGVVIKLNSLALQEQLGFTQKFPRWAIALKYPAEE
APTVVEKIRVNVGRTGAVTPLAEMRPVQLAGTTVSRATLHNRDRIAELDIREGDTVIVRK
AGEIIPEVVRVLYELRPPGTQPFEMPAHCPECGQPLVKPEDEAVTRCINASCPAILRKGL
EHWASRQAMDIEGLGEKWVVQLVDNGLVRAIADLYDLTIEQLLTLERMGQKSAQNLVEAI
ENSKSQPWSRVLYGLGIRHVGSVNAQTLAEQFPSVEALAQASIEDIAAVYGIGNEIARSV
HEWFQNPANQALINRLQTAGLKLAGEVSPVRDSGNAPVNQPLSGKTFVITGTLPTLKREE
AKALIQAAGGKVTESVSKKTSYLVVGEEAGSKLEKARALGIPQLTEAELIQLLNASGD
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgatcggagcagcactctcagaaaaccagcagcgggttaaagaactgcgtcaa
ctccttcaaaaagctagctatgcctactatgttctggatagccccatcatggaggactcg
gtgtacgaccagctctaccatgaactgctggctttagaaactgactttccggagttaatt
acacctgacagcccaactcagcgtgtcggagaaaaacccgccagtcaatttcattccgtc
aggcacaatatcccgctttacagcctggaaaatgcatttgacagtgcagatctggtgaaa
tggcaggaacgctggcgtcgagttgctcctgatatccatgaatttgaatatgtctgtgaa
ctcaaaattgatggttctgccctggctttgacctatgagaatggtttactggtaagaggt
gtaacgcgcggtgatgggattacgggtgaggacattacccaaaatgtgaaaaccatccgt
tctatcccgttgcgattggagttggatgatccgccaccaactgttgaagtgcggggggag
gcttttttgccgctcagttcctttgaaaccatcaaccaggaacgggaacaggcgggcgaa
cccccctttgccaatcctcgcaatgcggcagccggaactctgcggcagttagactcccgc
attgtggcaaaacggaagctggatttttttgcttatactctgcatattccagtgggtggc
agtcggcaatcagcggtcagcgagggagaggttcaacttgacctgttgagcaactccgca
gacgttgaatctgagcacattcctgtacccaatgcccggtaccccattccccagacccag
tgggaatgcctggagcttttgcaggacatgggctttaaggtgaacccggagcgatcgctc
tgctccaacctggaagaagttcaggagtattgcaatcgctggctgacggagcgccacaat
ttgccttacatgactgacggggtggtaataaagctaaactcgctggcacttcaggaacag
ttgggatttacccagaaatttccccgctgggcgatcgccctgaagtatccggcagaagag
gctcctacggttgtggaaaaaatccgtgtaaatgtcggacgcacaggtgcagtgactccc
ctggcggagatgcgtccagtgcagttagccgggacaactgtgtcgcgggcgactttacac
aaccgcgatcgcatcgctgaactggatatccgcgaaggagatacggtgattgttcggaag
gcgggcgaaatcattcctgaagtggtgcgggtcttgtatgaactccgtccacctggaacc
caaccctttgaaatgcctgcccactgcccggagtgtggtcaacccctggtgaaacctgag
gatgaagccgtaacccgttgcattaatgcctcctgtcccgcgattttgcggaagggcctg
gaacattgggcatcccggcaggccatggatattgaaggactgggtgaaaagtgggtggtt
caactggtggataacggactggtgcgggcgatcgctgacctgtatgacctgaccatcgag
caattgctgaccctggaacgaatggggcagaaatccgctcaaaatctggtggaggcgatt
gagaattccaaatcccagccctggtcccgggttttgtacggattggggattcgtcatgtg
ggcagtgtgaatgcccaaaccctggcggagcaatttcccagtgtagaagccctggcacag
gccagtatagaagatattgctgcggtctacggcattggcaatgaaattgcgcgatcggtg
catgagtggtttcaaaatcctgccaaccaggccttaattaaccggctacagaccgctgga
ctgaaactggccggggaagtaagcccggtcagggactcaggcaatgccccggttaatcaa
cctctatccgggaagacctttgtaatcacaggcacattgccaaccttaaagcgggaggag
gccaaggctttaattcaagccgctggggggaaagtgacagagtccgtcagtaagaaaacc
agctatctggttgttggagaagaggcgggttccaaattagagaaagcacgggcactggga
attcctcagttaacagaagctgaactgatccagcttctcaatgcttcaggtgattaa
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