Lepeophtheirus salmonis (salmon louse): 121123472
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Entry
121123472 CDS
T08214
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121123472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121123472
Spliceosome [BR:
lsm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121123472
Complex C
U5 SnRNP specific factors
121123472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
TPK_catalytic
Motif
Other DBs
NCBI-GeneID:
121123472
NCBI-ProteinID:
XP_040574528
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Position
8:complement(2265294..2268954)
Genome browser
AA seq
974 aa
AA seq
DB search
MDPDMYDEFGNYVGPELESEESESDEEDEEEVHGNDNLKDDEENEVEMEEDGSRTSVVLH
EDKKYYPTSAEVYGPDVETIVHEEDAQPLSEPIVAPVKKHKFQFIEQKLPETSYSSVYLQ
EMMEIPTRVRNVAFVGHLHHGKSSFADCLVQQTHPGFRTKDDKPIRYTDTLFTEQERGVS
IKAMPLSLVCQGIRGQKSYLVNLLDTPGHVNFSDEVTAAMRLSDGVVVFVDASEGVMLNT
ERLIKHAVQEQCAVTICINKIDRLILELKLPPQDAYYKLRHIVEEINGLLSLYSDKNAEQ
VISPLLGNVCFASSQYSLCFTLKSFAKLYGDAYDTIDVAEFARRLWGDIYFNAKTRKFSK
KPPHGSAQRSFVEFILEPIYKLFAQIVGDVDSCLPALIEELGIKLSKEETRLNIRPLLRL
INQKFLGDFNGFTEMLAEHIPSPEENAKVKVPHIYTGNLDSMRAKGMLDCDSEGTLMVHT
TKQYPTDDTTCFHVFGRVFSGRLRAGMDIRLLGENYTMFDEEDSRILTVGRLWIYEARYK
VEVLSVPAGSWVLIEGVDQPVVKTSTITAVGSEEEICIFRPLKFNTQSIIKIAVEPVNPS
ELPKMLDGLRKVNKSYPLLNTKVEESGEHVILGTGELYLDCVMHDLRKLYSEIDIKVADP
VVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENERVSITWNKKTLGEFF
QAQYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKGLLGSVKDPIVQGFQWGTREGP
LCEEPIRNTKFKILDAVIANEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYMFVEVLC
PADCVSAVYTVLRNRRGHATQDAPVPGSPLYITKAFIPAVDSFGFETDLRTHTQGQAFAL
SVFHHWQIVPGDPLDKSIVIRPLEPQPATALAREFMIKTRRRKGLSEDVSINKFFDDPML
LELARQDVMLNFPG
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggatccggatatgtatgatgagtttggtaattatgttggtcctgaattagaatctgag
gagtccgagtctgatgaagaggacgaagaagaggttcatggaaatgataatctcaaggat
gatgaggagaatgaggtggaaatggaagaggatgggtcccgaacttctgtcgttctccac
gaggataaaaaatattatcctacttctgctgaagtctacggtcctgatgtggagaccata
gttcacgaagaagatgctcaacctctctctgagcccattgtggcccccgtcaagaaacac
aagtttcagttcattgagcaaaagctcccggaaacatcctattccagtgtttatcttcaa
gaaatgatggaaattccaactagagtccgaaatgttgcatttgtgggacatcttcatcat
ggaaaatcatcctttgcagattgcttggtacaacagacccatcctggatttcgtactaag
gacgacaaacctattcgttacacagatacgctttttacggagcaagagcgtggcgtttct
atcaaggccatgcctctatccctggtttgccagggtattcgaggtcaaaagagctatttg
gtcaatctcttagatacacctggacatgttaacttctctgacgaagtaactgctgccatg
cgactctctgatggtgttgttgtttttgtggatgcgtcggaaggtgtaatgctcaatact
gagcgtctcattaagcatgctgttcaagaacaatgtgcagtcacgatttgcatcaataag
attgatcgtttgattttggaactcaagttacctcctcaagacgcttattacaaacttcga
cacattgtggaggaaataaatggacttttaagcttatactctgataaaaatgcggagcag
gtcattagccctctccttggaaatgtctgttttgccagttcccaatattctctatgtttt
acgctcaaaagctttgccaaactctatggagatgcctacgatactattgatgtggcggaa
tttgcacgacgtctgtggggtgatatttatttcaatgctaaaaccaggaagttctccaaa
aaacctcctcatgggtccgctcaaaggagttttgttgagtttattttagagccaatttat
aagctgtttgctcaaattgttggagacgtcgactcttgcttgccggctctgattgaagaa
cttggaattaaactctctaaagaggaaactcgcttaaatattcgccctcttctacgatta
attaatcaaaagtttctaggggacttcaatggattcactgaaatgttggctgagcacatt
ccctctcctgaggaaaatgctaaagttaaagttccgcacatatacactggaaatttggac
tcaatgagagccaagggaatgttagattgcgattctgagggtactctaatggttcataca
acaaaacagtatcctacagacgatacaacttgttttcatgtatttggaagagtattttct
gggagacttcgtgccggcatggatattaggttactaggagaaaactatactatgtttgac
gaagaagactctcgtatcctaactgttggacgactctggatttatgaagctcgctataaa
gtagaggtactgtcagttcctgcaggttcttgggtactcattgaaggagtggatcaaccc
gtggttaaaacctcaacgataactgctgtcggatccgaagaagagatttgtatctttagg
cctttaaaatttaacacacaatcaattattaaaattgctgttgagcctgtaaatccatca
gaacttccaaaaatgttggatggtctacgtaaggttaataaatcgtatcctcttttgaat
accaaggtggaagaatcgggagagcacgtcatcctcggtacaggagaactgtatttggat
tgtgtcatgcacgacttaaggaaattgtactctgaaattgacatcaaggtcgcagatccc
gttgtatccttctgtgaaactgttgttgaaacgtcctcgcttaaatgttttgctgaaact
ccgaacaaaaaaaataaaatcacgatgatcgcggaacctcttgaaaaaggcttggccgag
gatatcgaaaatgaacgagtatcaattacttggaataaaaagacacttggggaatttttt
caagctcaatacgattgggatttgttagcagcccgatcaatatgggcctttggacctgat
gccacagggcctaatatcctagttgatgacactttgccttctgaagttgataaaggattg
ttagggtcagtaaaggaccctattgttcagggatttcaatggggtactcgtgaaggacct
ctttgtgaagagcctattcgaaatacaaaatttaaaatcctcgacgctgtcatagccaat
gagcctattcacagaggaggtggtcaaattattccaacggcaagaagagtggcctattct
gcctttctcatggcaacacctcgattaatggagccttatatgtttgtcgaggtactatgt
cctgcagattgtgtttcagcagtatatactgtattgaggaatcgaagaggacatgctact
caggacgctcccgttcctggatctcctttatatatcacaaaggcattcatacctgcagtg
gactcatttggatttgaaacagatttgagaacacatacacaaggacaagcttttgctctt
tcagttttccatcattggcaaattgtaccgggtgatcctcttgacaagagtattgttatt
agaccccttgaacctcaaccagcgactgcattggcaagggaattcatgattaaaaccaga
cgaagaaaaggactctcagaggatgtctctataaataaattctttgacgatcccatgtta
ctggaacttgctagacaggatgtcatgcttaatttcccaggataa
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