Lepeophtheirus salmonis (salmon louse): 121126234
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Entry
121126234 CDS
T08214
Name
(RefSeq) TNF receptor-associated factor 6-B
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm04120
Ubiquitin mediated proteolysis
lsm04140
Autophagy - animal
lsm04144
Endocytosis
lsm04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121126234
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121126234
04140 Autophagy - animal
121126234
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121126234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsm04131
]
121126234
04121 Ubiquitin system [BR:
lsm04121
]
121126234
Enzymes [BR:
lsm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121126234
Membrane trafficking [BR:
lsm04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121126234
Ubiquitin system [BR:
lsm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
121126234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-TRAF
TRAF3_RING
zf-C3HC4_4
zf-RING_UBOX
zf-TRAF_2
Zn_Ribbon_TF
zf-C3HC4_3
zf-rbx1
Zn_ribbon_3
zf-RING_5
Sina_ZnF
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
121126234
NCBI-ProteinID:
XP_040577489
LinkDB
All DBs
Position
11:14429095..14432057
Genome browser
AA seq
453 aa
AA seq
DB search
MDKETGRSGTKGIPKHYFQGGYDYDFVQQLPKRFECPICLLCQRDPHQTSCGHRFCYSCI
ITWLNEGRTCPDDNCSLGEGDIFPDSMAHREILQLMITCPQKDHGCGAIIHLSDVENHLR
SCKYITQERSSKKHENPSRSSDSNTCPSCGNVLDDHEITQGQGNRLVCPYAIVACPFTSA
GCAIKIMRRELQDHIKSQTSHHVSLLWDKLRKIQQNYDTPSLTTQSSVDETASSSFKEGI
LSRDSDLRLSGSNLHSTQKLIKDLFRRVVSLEQKNCQLEIRNEMLQEKLKKVMCSEFEAQ
GRYCNGKFVWKLLDFPELHKKMRTDCHFVVYSKGFYTSVFGYKVCLRSNINLVNGEEYLG
VFVHLMRGDNDSALSWPFRGQISLTAVREISENFFETIKEIPEGSKAFERPISERNPTGF
GFTEFIRVNALYSGGFINTENTLILKAELFTMD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggataaggaaaccggacgttccgggactaaaggaatacctaaacattattttcaagga
gggtacgactatgactttgtacaacaattacccaagagatttgagtgtccaatttgctta
ctttgtcaaagagatccacatcaaacaagttgtggtcatcgtttttgctattcatgtatc
ataacatggcttaatgagggccgaacatgtcctgatgataattgcagtcttggagaagga
gatatattccccgactccatggctcatcgagaaatacttcaacttatgatcacttgtcct
caaaaggaccacggatgtggagctataattcatctttcagatgtagaaaatcacttaagg
tcctgcaaatatataactcaggagagatcatctaaaaaacatgaaaatcctagtagatcc
tcagattcaaacacttgtccatcctgtggcaatgtattggatgatcatgaaataactcaa
ggacaaggaaacagacttgtatgtccatacgccatagtagcatgtcctttcacctctgct
ggatgtgctataaaaatcatgaggcgagaacttcaggatcatatcaagtctcaaacatcc
catcacgtgtctctcctttgggataaactccggaaaatccaacaaaactatgacacacca
agtctcactacacaaagttcagtggatgaaactgcatcatcctcttttaaagaaggaatt
ctttccagagactcggatcttagactctctggttctaatttacattctactcaaaaactg
atcaaggatctgtttcgaagggttgtctcactcgaacaaaaaaattgtcaacttgaaata
agaaatgagatgctccaagaaaagttaaaaaaagtgatgtgttctgaattcgaggcacag
gggcgctattgtaatgggaagtttgtctggaagctgttggattttcccgaattgcacaag
aaaatgagaacagactgccattttgtggtctattcaaaaggattttacacgagtgttttt
ggctataaagtatgtttgagaagtaatatcaatttagttaatggagaggagtatcttgga
gtatttgtacatctcatgagaggagataatgacagtgctctctcatggccgtttcggggt
caaatctccctcactgcagtgcgtgaaatcagcgaaaactttttcgagaccattaaagaa
ataccagagggaagtaaggcatttgaaaggccaataagcgagagaaatcctacaggattt
ggattcacagagttcatccgcgtgaatgcattatactctgggggattcataaatacagaa
aatacattgattttaaaagcggaattattcacaatggattaa
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