Fructilactobacillus sanfranciscensis: LSA_04250
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Entry
LSA_04250 CDS
T01627
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lsn
Fructilactobacillus sanfranciscensis
Pathway
lsn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LSA_04250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsn03400
]
LSA_04250 (mfd)
Enzymes [BR:
lsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LSA_04250 (mfd)
DNA repair and recombination proteins [BR:
lsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LSA_04250 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
MFD_D3
AAA_22
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AEN98873
UniProt:
G2KUY4
LinkDB
All DBs
Position
409319..412846
Genome browser
AA seq
1175 aa
AA seq
DB search
MMQLNEFLKEVPQYQTILDNLEPDTKQLVTGTSGTAQKLILSEVLKDTKKPMIFVTDTMD
HADQAVKEFEEVLPDQQVYEFPAEELIAAEIATSSPQYRSSRVKAMSALQSGKPVVVIVS
TSGLKRYLPEPATFKASALQAKIGSEFNFADLQKQLASMGYIRNNLVSIPGEFAVRGSII
DIYPLNSEYPVRLDFFDTEVDSMRYFDAATQRSIENIQELTVLPATDFLPSEADRQHGIK
ELTKQIQKTDNEDLIKNINLVIKDLGTKVTDSLWMQYAEFIFRKATSILDYLDPQGVVAF
DDYARVRDTNKQLETDENNWKNSVMQNDQILKKQKFSLNFKTIIEENQHPKMLLSLFQKG
LGRMKLDDIVDIKVRPVQRFFGQMPMLKTEMDRYQQEKATVIIMVPNQERMQKVTQTLAD
FDMETIQTNVNDIQPHRVQVVEGNFDLGFELPVANLVVITENELFKRVSERKQPRRIRHQ
TFTNAERIKSYTDLKPGDFVVHVNHGIGRYDGMKTMEVDGKHQDYLTITFKNDAHIFIPV
TQLNLIQKYVASEGKQPRMNKLGGNEWAKTKSKVSKKVDDMADELVELYAKREHEKGFAF
PSDDDYQVEFDNDFPYTPTPDQVRSADEIKHDMEQPHPMDRLLVGDVGYGKTEVAMRAAF
KAVEAGKQVAFLVPTTVLAQQHYETLVKRFANFPVSVGVLSRFNSAKQTKQDLADLKDGK
LDIVVGTHRLLSKDVVFKDLGLLIVDEEQRFGVKAKEKIKELRSNVDVLTLTATPIPRTL
NMSMMGVRDLSVIETAPANRYPIQTYVIEQNDATIVDGIRREMQRGGQVFYLHNRVKDIE
QVVGKLEKLLPDARIAYIHGQQTETQMERVLYDFVNGDYDVLVTTTIIETGIDIPNVNTL
FVENADRMGLSQLYQIRGRIGRSNRVGQAYFMYQPNKVLTEAGESRLEAIKDFTELGSGF
KIAMRDLSIRGAGNVLGSQQHGFIDSVGYDMYTKMLSDAVAQKQGKKRKIDKTNSAVELG
IEAYLPSDYIEDQQQKIELYKRIRQMDSTEQFTELQSDLIDRFGEYPAAVANLLDVDLIK
MLADFDLVDKIRKDKQTIVVTFSTLGTKLYSSKEILQAIASTEFRSTIKMIDGHYQIRLI
VQPTMEVIDWLTNLKQFVQELEKIRNEHEMQDEKE
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgatgcaattaaatgagtttttaaaagaagttcctcaatatcaaactattttagataat
ttagaacctgatactaagcagttagtaacgggaactagtggaactgcacaaaaattaatt
ttaagtgaggttttaaaagacaccaaaaagccgatgatttttgtaactgatacgatggat
catgctgatcaggctgtcaaagagtttgaagaagttttgccagatcaacaggtttatgaa
tttcctgctgaagaattaattgcagctgaaattgcgaccagttcaccccaatatcgttct
tcaagagtaaaggcgatgagtgctttacaaagtggtaaaccagttgtagtgattgtttca
acatctgggttaaaacgatatttaccagaaccagctacttttaaggctagtgctttacaa
gcaaaaattggtagtgaatttaactttgctgatttacaaaaacagctagccagtatggga
tacatcagaaataatttagtttcaattcctggtgaatttgcagttcggggatcaattatt
gatatttatcctttaaattccgaatatcctgttcgacttgatttttttgataccgaagtt
gattcgatgcgttattttgatgcagccacacaacgaagtatagaaaatattcaagagtta
accgttttaccagccactgactttttgccatcagaggcagatcgacaacatggaattaaa
gaattaacgaagcaaatccaaaaaactgataatgaagatttaattaaaaacattaattta
gtaattaaagacttagggactaaagttactgattcattgtggatgcagtatgcagaattt
attttccgtaaagcaacatcaattttagattatttagatcctcaaggggttgtggctttt
gacgactatgcacgagtaagggatactaataagcaacttgaaactgatgaaaataattgg
aaaaattcagttatgcaaaatgaccaaattttaaaaaaacaaaaatttagtttgaatttt
aaaacgattattgaagaaaatcaacatcctaaaatgttattgtccttattccaaaaagga
ttaggacgaatgaaattagatgatattgtagatatcaaagttcgtcctgtgcaacgtttc
tttgggcaaatgccaatgttgaagacggaaatggatcgttatcaacaagaaaaagccaca
gtaatcataatggttccaaatcaagaaagaatgcagaaggtcacgcagactttggctgat
tttgatatggaaaccatacaaacaaatgtcaatgatattcaaccacatcgagtgcaagtt
gttgaaggtaattttgatttggggtttgaactaccagtcgctaatttagtggtaattact
gaaaatgaattattcaaacgggtttctgaacggaaacaacctcgtcgaattcgtcatcag
acctttacgaatgccgaacgaattaaaagttatacggacttaaaacctggagattttgtg
gttcacgttaatcatgggattggtcgttacgatggcatgaaaaccatggaagttgatgga
aaacatcaagattacctaacgattactttcaaaaatgatgcccacattttcattcctgtt
acgcaattaaacttgattcaaaagtatgtggcttctgaaggaaaacaaccacgtatgaat
aaattaggtggtaacgaatgggcgaagactaaaagtaaggtttcgaaaaaagttgatgat
atggccgatgaattggtcgagctttatgcgaaacgagaacacgaaaaaggtttcgctttt
ccatcagatgatgattatcaagtagaatttgataatgactttccttacacaccaactccc
gatcaagttcgaagtgcggatgaaatcaaacatgatatggaacagccacatcctatggat
cgcctactagttggtgatgttggctatggtaagactgaagttgcaatgcgagctgccttc
aaagcagttgaagctggcaaacaggtggcatttttagtaccaacgacggtacttgctcaa
caacactatgagacgttagtgaaaagatttgctaattttcccgttagtgtaggagttcta
tcaaggtttaatagtgccaaacaaaccaaacaagatttggctgatttaaaagatggaaag
ttagatattgtggtgggaactcatcgattgctttcaaaagacgttgtgtttaaagattta
gggttattaattgttgatgaagagcaacgttttggggtaaaagctaaagaaaaaatcaag
gaattacggtctaatgtggacgtgttaactttgacagctactccaattccgagaacttta
aatatgtcgatgatgggggttcgtgacctttcggtaatcgaaacagctcctgctaatcga
tatccaattcaaacctatgtaattgaacaaaatgacgccacgattgtggatggaattcgt
cgagaaatgcaacggggcggacaagtcttttatttacacaatcgggttaaagatattgaa
caagtagttggaaaattagaaaagctacttccggatgcacgcattgcctacattcatgga
caacaaacagaaactcaaatggaacgcgtgctctatgattttgttaatggtgattacgat
gttttagttacaactaccatcattgaaaccggaattgatataccaaacgttaatacgctt
tttgtcgaaaatgctgatcgaatggggctttcgcagttgtatcaaattcgtggtagaatc
ggacgaagtaatcgagttgggcaagcatactttatgtaccaacctaataaagttttgacg
gaagcaggtgaaagtcggttagaagctattaaggactttactgagcttggatcaggtttt
aaaattgccatgcgagatctttcaattcggggagcaggaaacgtattgggaagtcagcaa
catggatttattgattcagttggttatgacatgtacactaagatgctttctgatgctgtg
gcacaaaaacaagggaagaaacgtaaaattgataaaactaattctgcggttgaattggga
attgaagcttatcttccttctgattatattgaagatcagcaacaaaaaattgaactttac
aaacgaattcgccaaatggatagtactgaacaatttactgaattacaaagtgatttaatt
gatcgttttggagaatatccagcagcggttgctaatttactagatgttgatttaattaaa
atgttagcagactttgatttagttgataaaatcagaaaagataagcaaacaattgtagta
actttcagtacattaggaacaaaactctattctagtaaagaaattttacaagcaattgcc
agtactgaatttcgttcaaccattaagatgattgatggacattaccagattcgcctaatt
gtgcaaccaacgatggaagtcattgattggctaactaacttaaaacagtttgtccaagaa
ttagaaaaaattagaaatgaacatgagatgcaagacgagaaagaatag
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