Fructilactobacillus sanfranciscensis: LSA_09020
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Entry
LSA_09020 CDS
T01627
Symbol
cshB
Name
(GenBank) DEAD-box ATP-dependent RNA helicase cshB
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lsn
Fructilactobacillus sanfranciscensis
Brite
KEGG Orthology (KO) [BR:
lsn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsn03019
]
LSA_09020 (cshB)
03009 Ribosome biogenesis [BR:
lsn03009
]
LSA_09020 (cshB)
Enzymes [BR:
lsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSA_09020 (cshB)
Messenger RNA biogenesis [BR:
lsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSA_09020 (cshB)
Ribosome biogenesis [BR:
lsn03009
]
Prokaryotic type
rRNA helicases
LSA_09020 (cshB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Cas3-like_C_2
PrpR_N
Motif
Other DBs
NCBI-ProteinID:
AEN99302
UniProt:
G2KVQ8
LinkDB
All DBs
Position
complement(874789..876150)
Genome browser
AA seq
453 aa
AA seq
DB search
MSASFKDYNFKPFINDAINDLGFKNPTPIQAKVIPTIRHGKSVIGKSATGSGKTHAFLLP
LINQLDADNPKTQIVITTPSRELAYQIYENVKQITSFSSETIHIANYVGGTDKEKQIEKL
KREQPQIVVGTPGRILDLSKAGHLDINTANQLVIDEADMTLDLGFLETVDKIAAAMAKDI
QMMVFSATIPPKLKPFLKKYMKNPVLDDIPTETVINKDVDNWLISTKGQDKNGLIYKLLT
MGNPYLALIFANTRERVDEIEEYLQGQGLKVAKIHGGMQPRVRKRVMKQIQNLDYQFVVA
SDLAARGIDIDGVSHVINDDIPTDNEYFIHRVGRTGRKGMKGIAITLYGPDEDTQVLELE
KMGIKFKPKEIKNGEVVDTYDRRRREKYKGHHEKLDGSTLAMINKKKKNVKPGYKRKIKR
AIKNKDDQNRKIELRSQIRSRKKQKKRSSERYQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcatcttttaaggattataattttaagccatttatcaacgatgcgattaatgac
ttaggatttaaaaatccaacaccaattcaagctaaagtaattcccaccattcgtcatggt
aaaagcgtaattggtaaatcagcaactgggagtggtaagactcatgctttcttactacct
ttaattaaccagttagacgcggataatccgaaaacacaaatcgtaattacaaccccaagt
cgggaattagcttatcaaatttatgaaaatgtaaaacaaattaccagtttcagttcagaa
acaattcatattgccaattatgttggtggaactgataaagaaaaacaaattgaaaaatta
aaaagagaacaaccacaaatcgtagttggaactcctggtcggattttagatttatctaaa
gccggtcatttagatatcaatacagctaaccaattagtaattgacgaagccgatatgact
cttgaccttggttttttggaaaccgttgataaaattgcagcggccatggcaaaagacatt
caaatgatggtcttttctgctacgattccaccaaaattaaagccatttttaaaaaaatac
atgaaaaatccagtattggatgatattccaacagaaacggtcatcaataaagatgttgac
aactggttaatctcaactaagggtcaagataaaaacggtttgatttataaattattgacc
atgggaaatccatatttggctttgatatttgccaatactcgtgaacgagtagatgaaatt
gaagaatatcttcaaggtcagggattaaaagttgccaagattcatggtggtatgcaaccc
cgagttcgaaaacgtgtgatgaagcaaatccaaaatcttgattaccagttcgttgttgca
tctgatttagcagcccgtggaattgatattgatggggtttctcatgtcattaatgatgat
attcctactgataatgaatactttattcatcgagttggtcggactggacgtaaaggaatg
aagggaattgccattactctttacggtcctgatgaagatactcaagtgcttgaattagaa
aaaatgggaattaaatttaaacctaaagaaatcaaaaatggtgaagttgttgatacctat
gatcgacgtcgtcgggaaaagtataaaggccatcatgaaaagcttgatggttcaacgtta
gccatgattaacaagaaaaagaaaaatgttaagcctgggtataaacgaaaaatcaaacga
gcaattaaaaataaagatgaccaaaatcgtaagatcgaattacgtagtcaaattcgttca
cgtaagaaacaaaagaaacgtagttcagaacgttatcaataa
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