Fructilactobacillus sanfranciscensis: LSA_09910
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Entry
LSA_09910 CDS
T01627
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lsn
Fructilactobacillus sanfranciscensis
Pathway
lsn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSA_09910 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsn03019
]
LSA_09910 (rnjA)
Messenger RNA biogenesis [BR:
lsn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LSA_09910 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AEN99390
UniProt:
G2KUD6
LinkDB
All DBs
Position
962493..964181
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AA seq
562 aa
AA seq
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MNKLNVKNNETAIYGVGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEEGQLGIDYVIPDYQ
FLVENQSKIKALVITHGHEDHIGGIPFILQSINVPVYAGPLALAMIKGKLEEHGMLKSTE
LHEINDKSVLKFKKTSVSFFRTTHSIPDTLGVAVHTPDGVIVETGDYKFDLTPVTNTPPD
LQAMAKLGEEGVLCLMADSTNAEKPVWTKSERYVSDSVRKIFLRVHGRIIFATFASNLSR
VMTAIDAAYKNGRKIAVFGRSMESAVVNGRALGYIKVPDSAFADASELKSLPADKVMILC
TGSQGEQMAALSRIANGTHRQISIEPGDTVVLSSNPIPGNVLSVNRVLNELEEAGAHVIK
GYENKIHTSGHGGQEEEKLMIRLMKPKFFVPVHGEYRMQKIHIGLAEQCGIPADHCFILK
NGEVLALTKDTARLAGSFVAGDVFIDGNGVDSVNKNVIKDRQLLSEEGLVVVVATINLKD
KEIQSGPDLLSRGFVYMRESGELLDQGRKLVFKTIRRTMDTQNADEKSIKKAIVNELSNF
LFEKTERRPLILPMLIMNDNNK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaataaactaaacgtcaaaaataacgaaactgcaatttacggcgttggtggacttggt
gaaattggtaaaaatacttatggtgttcaatttcaagatgaaattgtattaattgatgct
ggaattaaattccccgaagaaggtcaactaggaatcgattacgtaatccctgattaccaa
tttttagtagaaaaccaaagtaaaattaaggcattagttatcacccatggtcatgaagac
catattggtgggattccctttattttacaatctatcaatgtacctgtttatgccggccct
ctagctctagctatgattaaaggtaagcttgaagaacatggaatgctcaaatcaactgag
ctacatgaaattaacgataaatcagtacttaaatttaaaaaaactagtgtttctttcttt
agaactactcattcaattcctgatacacttggtgttgctgttcatactcccgatggtgta
atcgttgaaactggagattataaatttgatttaaccccggttacaaatactccaccagat
ttacaagcaatggctaaattaggtgaagaaggtgtgctttgtctaatggctgatagtacc
aatgctgaaaaaccagtttggactaagtcagaaagatacgttagtgactctgtccgtaag
atttttttacgagttcatggcagaatcatctttgcgaccttcgcttctaacctttcacga
gttatgactgccatcgatgcagcttacaaaaacggacgtaaaattgctgtttttggtaga
agtatggaatctgcagtagttaacggaagagcattaggctacattaaagttcccgacagt
gcatttgctgatgcttcagaactaaaatcattacctgctgataaagtaatgattttatgt
actggttctcaaggtgaacaaatggcagctctttcaagaattgctaatggaactcatcga
caaatttcaattgaaccaggtgacactgtagttctttcaagtaacccaattcctggtaac
gttttaagcgttaaccgagttttaaacgaacttgaagaagctggtgctcacgttatcaag
ggttatgaaaataaaattcatacttctggtcatggtggtcaagaagaagaaaaacttatg
attcgtttaatgaagcctaagtttttcgttcctgttcatggtgaatatcggatgcaaaaa
attcacattggtcttgctgaacaatgtggaattcctgctgaccactgtttcatccttaaa
aatggtgaagttcttgctcttaccaaagatactgcccgtttagctggtagttttgttgca
ggtgatgtcttcattgatggaaatggtgttgatagtgttaacaaaaacgttatcaaggat
cgtcagcttctatcagaagaaggtttagtggtcgttgttgcgacaattaatcttaaagat
aaagaaattcaatctggtcccgatcttctttctcgtggttttgtctacatgcgcgaatct
ggggaattattagatcagggtcgcaagttagttttcaaaacaattagaagaactatggac
actcaaaacgctgatgaaaaatcaatcaaaaaagcaatcgttaacgaactttcaaacttc
ttgtttgaaaaaacggaacgacgtcctttgattttgccaatgttaattatgaatgacaac
aacaaataa
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