Fructilactobacillus sanfranciscensis: LSA_11410
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Entry
LSA_11410 CDS
T01627
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lsn
Fructilactobacillus sanfranciscensis
Pathway
lsn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSA_11410 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsn03021
]
LSA_11410 (rpoC)
03400 DNA repair and recombination proteins [BR:
lsn03400
]
LSA_11410 (rpoC)
Enzymes [BR:
lsn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LSA_11410 (rpoC)
Transcription machinery [BR:
lsn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSA_11410 (rpoC)
DNA repair and recombination proteins [BR:
lsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSA_11410 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEN99529
UniProt:
G2KWK4
LinkDB
All DBs
Position
complement(1095740..1099405)
Genome browser
AA seq
1221 aa
AA seq
DB search
MKEGTPMVDVNKFKSMQVGLASPETIRSWSYGEVTKPETINYRTLKPEKDGLFDERIFGP
TKDWKCACGKYKGIRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVTHIWYYKGIPSRM
GLVLDMSPRALEEIIYFASYVVVDPGNTPLEKKQLLTEQEYRDKKREYGNRFDAQIGAEG
IRALLDSVDLDKEVTELKAELKKATGQKRTRAIRRLDILEAFLTSGNNLSWMVMDTIPVM
PPDLRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLHAPGIIVQNEKRMLQEAVDA
LIDNGRRGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKLSQ
MGLPVSMALELFKPFIMHELVKRGLASNVKNAKREIERKDDVVFDVLPYVIKEHPVLLNR
APTLHRLGIQAFEPVLVSGKSMRLHPLVCAAYNADFDGDQMAIHVPLSDEAQAESRLLMA
AAGHILAPKDGKPVVAPSQDMVIGNYYLTMEEPGREGEGMIFNSPDEVELAYRDGLVHWH
SRIGIPASAFPDKPFTDDQKDKIMVTSVGKVIFNGILPKDFVYLNEPTATNLNGFVPDNY
FLKHGENIHDHIDNTEPVRPFKKSFLSDIIAEVYNQYKVTETSELLDRIKDLGNDESTKS
GLTVGMSDITELKEKPEIVAEGHKKVETITKQFRRGLITDQERYERIVNVWNDARDQIQD
VLMQNFDPENPIFMMSDSGARGNISNFTQLAGMRGLMASPDGKIMELPITSNFREGMSVL
EMFISTHGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREKDCHTDRGLVVRAIKEGNE
MIEPLYDRILGRNAMKTVKNPETGEVIVGKNEMIDDKKAQQIVDAGIESVEIRSAFTCNT
AHGVCEMCYGQNLATGDNVEVGEAVGTVAAQSIGEPGTQLTLRTFHTGGVASNTDITQGL
PRVQEIFEARNPKGKSTISEVTGVVELIEEDPAEGVKEITIQGKADTRKYKVPLSARMRV
AEGDTVRRGDALNEGSIDPKELLKIRDTLSTETYLLTAVQEVYRRQGVEVNDKHAEIMVR
QMLRKVRIMDPGDTDILPGTLIDIDDFKERNADAVMTGKVPATARPVLLGITKAALETNS
FLSAASFQETTRVLTDAAIRGKVDPLIGLKENVIIGKLLPAGTGVHEYEDIEPEEVGKPS
GESVVAGSDKTSDSDTDNATK
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
ataaaggaggggacgccaatggttgatgttaataaattcaaaagtatgcaagttggactt
gcatctcctgaaacaattcgtagctggtcatatggtgaagtaactaaaccagaaacgatt
aactatcgaactttgaaaccagaaaaagatggtttgttcgatgaaagaatctttggacct
actaaggattggaaatgtgcctgtggtaaatacaaaggtattcgctacaaaggtattgtt
tgtgatcgttgtggagttgaagttactcgtgctaaagttcgtcgtgaacgaatggggcat
atcgaattagctgctccagtaactcacatctggtattacaagggaattcctagtcgaatg
ggattagttctagacatgagtcctcgtgccttagaagaaatcatctacttcgcttcatat
gtagttgtagatcctggtaatacacctctagaaaagaaacaactattaactgaacaagaa
taccgtgataagaaacgtgaatacggtaatcgttttgatgcacaaattggtgctgaagga
attcgtgctttacttgatagtgttgatcttgataaagaagttacagaattaaaagctgaa
cttaagaaagcaactggtcaaaagagaactcgtgcaatccgtcgtttggatattttggaa
gccttcttaacttctggaaacaatttatcatggatggtaatggatacaattccagttatg
ccacctgatttacgtccaatggttcaacttgaaggtggacgttttgccacttctgatttg
aatgatttataccgtcgagtaattaaccgtaataaccgtttgaaacgattattagattta
cacgctcctggtatcattgttcaaaacgaaaagagaatgttacaagaagctgttgatgct
ttgattgataatggtcgtcgtggccgtcctgttgcaggtcctggtaaccgtccattgaaa
tcactttctcacttgcttaagggtaagcaaggtcgtttccgtcaaaacttacttggtaaa
cgtgttgattattcaggtcgttcagttattgatgttggtccatggttaaaacttagccaa
atgggtcttcctgtatcaatggcacttgaattgttcaaaccatttatcatgcatgaattg
gttaaacgtgggttagcttcaaacgttaagaatgctaaacgtgaaattgaacgtaaagat
gatgtcgtattcgatgttcttccttacgtaatcaaagaacacccagttctattgaaccgt
gcccctactttgcatagacttggaattcaagcctttgaaccagtattggttagcggtaaa
tcaatgcgtttgcacccattagtttgtgctgcttacaatgccgattttgatggtgaccaa
atggccattcacgttcctctttctgatgaagctcaagctgaatcaagattattaatggct
gctgctggacatatcttggctccaaaagatggaaaacccgttgtggctccatcacaagat
atggttattggtaactattacttaactatggaagaacctggacgtgaaggtgaaggaatg
attttcaattcacctgatgaagttgaacttgcttatcgtgatggtttggttcactggcac
agtagaattggaattccagcttctgctttcccagataaaccatttaccgatgatcaaaaa
gacaagattatggttacttcagttggtaaagtgattttcaatggaatcttacctaaagac
ttcgtatacttgaatgaacctactgcaactaaccttaatggatttgttccggataattac
ttcttgaaacatggagaaaacattcacgatcacattgacaatactgaaccagttagacca
tttaagaagagtttcttatcagatatcattgctgaagtttacaaccaatacaaggttact
gaaacttcagaattacttgaccgaatcaaggatcttggtaacgacgaatctactaagtct
ggtttaactgtcggaatgtcagatattactgaacttaaagaaaaaccagaaattgtggct
gaaggtcacaaaaaggttgaaacaatcactaaacaattccgtcgtggtttgattactgac
caagaacgttatgaaagaattgttaacgtttggaatgacgctcgtgatcaaattcaagat
gtcttaatgcaaaactttgatccagaaaacccaatctttatgatgagtgattctggagct
cgtggaaacatttcaaactttacgcaacttgccggaatgcgtggattgatggcttctcct
gatggtaaaattatggaacttccaattacatctaacttccgtgaaggaatgtctgttttg
gaaatgttcatttctacccatggtgctcgtaaagggatgaccgatactgccttgaagaca
gccaactctggttacttaactcgtcgacttgttgatgttgcccaagatgttatcattcgt
gaaaaggactgtcatactgatcgtggattagtagtccgtgcgattaaagaaggtaacgaa
atgatcgaacctctttatgatcgtattcttggtagaaacgctatgaagactgttaagaat
ccagaaactggtgaagtaattgttggtaagaatgaaatgattgatgataagaaagcacaa
caaattgttgatgcaggaattgaatcagttgaaattcgttctgccttcacttgtaatact
gctcacggagtttgtgaaatgtgttatggtcaaaacttagctactggtgataacgttgaa
gttggtgaagcagttggtactgttgctgcgcagtcaattggtgaacctggtactcaatta
acccttcgtactttccatactggtggggttgcaagtaacactgatattacccaagggctt
ccccgggttcaagaaatttttgaagctcgtaatcctaaaggtaaatcaaccatctctgaa
gttactggagtagttgaattaatcgaagaagatcctgctgaaggtgttaaagaaattacc
attcaaggtaaagctgacactagaaagtacaaggttccattgagtgctcgtatgcgagtt
gctgaaggtgacacagttcgccgtggtgatgcgcttaacgaaggttcaattgatcctaag
gaacttcttaagattcgggatactttatcaactgaaacttacttattgactgcggttcaa
gaagtttaccgtcgtcaaggggttgaagttaatgataagcatgctgaaatcatggttaga
caaatgcttcgtaaggttcgaattatggatcccggtgatacagacatcttgcctggtaca
ttgatcgatattgatgactttaaagaacgaaatgctgatgcagttatgactggtaaagta
ccagctactgctcgtccagtattgcttggaattactaaagctgctcttgaaactaatagt
ttcttatcagctgcttcattccaagaaactactcgagtacttactgatgctgcaattcgt
ggtaaagtcgatccattaattggacttaaagaaaatgttattattggtaagcttcttcct
gctggtacaggtgttcatgaatatgaagacattgaaccagaagaagttggtaaaccatct
ggtgaaagtgttgtcgctggttctgataaaacatctgattcagatacagataatgcaact
aaataa
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