Lysobacter soli: GOY17_07640
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Entry
GOY17_07640 CDS
T06337
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lsol
Lysobacter soli
Pathway
lsol03030
DNA replication
lsol03410
Base excision repair
lsol03420
Nucleotide excision repair
lsol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GOY17_07640 (ligA)
03410 Base excision repair
GOY17_07640 (ligA)
03420 Nucleotide excision repair
GOY17_07640 (ligA)
03430 Mismatch repair
GOY17_07640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsol03032
]
GOY17_07640 (ligA)
03400 DNA repair and recombination proteins [BR:
lsol03400
]
GOY17_07640 (ligA)
Enzymes [BR:
lsol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GOY17_07640 (ligA)
DNA replication proteins [BR:
lsol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GOY17_07640 (ligA)
DNA repair and recombination proteins [BR:
lsol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GOY17_07640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GOY17_07640 (ligA)
MMR (mismatch excision repair)
DNA ligase
GOY17_07640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GOY17_07640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
QGW64794
LinkDB
All DBs
Position
1674938..1677289
Genome browser
AA seq
783 aa
AA seq
DB search
MAKTQTPADRIAELRQRIDDANYRYYVLDDPAIPDAEFDQLLRELQSLEAEHPDLVTTDS
PTQRVGIAPSGTFAQVRHAIPMLSLGNAFTDEEVADFERRIEEKLGRRAPKFSVEPKLDG
LAISLRYENGRFVQGATRGDGATGEDVTANLRTIKAIPLQMRGSGWPAVLEVRGEVYMPL
EAFKKYNERAVSVGGKVLANPRNGAAGSLRQLDPRITAQRPLAFYAYAVGVVEGAELPPT
HSQTLAKLREWGFPVSGLNDVVAGAEGLLGYYSGIGKQRDSLPFDIDGVVYKLDDYEGQR
EMGFVSRAPRWAIAHKFPAQEQSTVLEGIDIQIGRTGAATPVARLKPVQVAGVIVTNATL
HNADQIARLDVRIGDTVIVRRAGDVIPEIVRVVPEYRDPHAPQWQMPTQCPVCGSEIVRE
EGEAVWRCSGELTCAAQRKEAIRHFASRRAMDIEGLGERFIEDLSDLGYLQSVADLYKLE
LDDLLEMKRRADERDGTTPETVKSGKVATKWAENLIAAIDHSRTTTLERFLYALGIQHVG
ESTAKALAAWFGDIALIRRLPWPLFKRVPDVGGEVARAIGHFFDQPGNQQVIDDLLARGV
TITDTHAPNAKLRDGLDVATLLVDLEIPKITKIRADQLASAFPNVQALLDAPQHNFVTAG
LPNDTAISLAEWLENEEHARLLGRAGESLATLLSLTPEGEVAAAGPLDGQTAVLTGTLAA
MSRDEAKAKLEALGAKVAGSVSKKTSFVVAGEAAGSKLDKATELGVDIWDEAKLLAFLAQ
HGG
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
gtggccaagacccagactcccgccgatcgcatcgccgaactgcgtcagcgcatcgacgac
gccaactaccgttattacgtgctcgacgatccggcgattccggatgccgagttcgaccag
ctgctgcgcgaactgcaatcgctggaagccgaacacccggatctggtgacgaccgattcc
cccacgcagcgcgtcggcatcgcgccgagcggcacgttcgcgcaagtgcgccatgcgatt
ccgatgctctcgctcggcaatgccttcaccgacgaggaagtggccgatttcgagcgtcgc
atcgaggaaaaactcggtcgccgcgcaccgaagttctcggtcgaacccaagctcgacggc
ctggccatcagcctgcgttacgagaacggccgcttcgtgcagggcgccacgcgcggcgat
ggcgcgacgggcgaggacgtcacggccaacctgcgcacgatcaaggcgatcccgctgcag
atgcgcggctccggttggccggccgtgctggaagtgcgcggcgaggtctacatgccgctg
gaggcgttcaagaagtacaacgagcgcgcggtatcggtaggcggcaaggtgctcgccaac
ccgcgcaacggcgcggccggttcgttgcgccagctcgatccgcgcatcaccgcgcagcgg
ccgctcgcgttctacgcgtacgccgtgggcgtcgtcgaaggcgcggaactgccgccgacg
cactcgcagacgctcgcgaagctgcgcgagtggggctttccggtgagtgggctcaacgac
gtcgtggccggcgccgaaggtctgctcggctactacagcggcatcggcaagcagcgcgat
tcgctgccgttcgacatcgacggcgtggtctacaagctcgacgactacgaaggccagcgc
gagatgggcttcgtctcgcgcgcgccgcgctgggccatcgcgcacaagttcccggcgcag
gagcaatccacggtgctggaaggcatcgacatccagatcggccgcaccggcgccgcgacg
cccgttgcgcgcctgaaaccggtgcaggtcgccggcgtcatcgtgaccaacgcgacgctg
cacaacgccgaccagatcgcgcgactggacgtgcgcatcggcgatacggtgatcgtgcgt
cgcgccggcgacgtgattcccgagatcgtgcgcgtcgtgcccgaataccgcgatccgcac
gcaccgcagtggcagatgccgacgcagtgcccggtgtgcggttcggagatcgtccgcgag
gaaggcgaagcggtgtggcgctgctcgggcgaactcacctgcgccgcccagcgcaaggaa
gcgatccgccacttcgcgtcgcgacgcgcgatggacatcgaaggcctgggcgagcgcttc
atcgaggatctgtccgacctcggctacctccaatcggtcgccgacctctacaagctcgaa
ctcgacgacctgctggaaatgaagcgccgcgcagacgagcgcgacgggaccacgcccgag
acggtcaagtccggcaaggtcgccacgaagtgggccgaaaacctgatcgccgcgatcgac
cacagccgcaccaccacgctggagcgcttcctctacgcgctcggcatccagcacgtcggc
gagagcacggccaaggcgctggcggcgtggttcggcgacatcgcgctgatccgccgcctg
ccgtggccgctgttcaagcgcgtgcccgacgtcggtggcgaagtggcgcgcgcgatcggg
catttcttcgaccagcccggcaaccagcaggtgatcgacgacctgctcgcgcgcggcgtg
accatcaccgacacgcacgcgccgaacgcgaagctgcgcgacggcctggatgtcgcgacg
ctgctggtggacctggaaataccgaagatcacgaagatccgcgccgaccagctggcgagc
gcgttcccgaacgtgcaggcattgctcgacgcgccgcagcacaacttcgttaccgccggc
ctgccgaacgacacggccatctcgctggccgaatggctggaaaacgaggaacacgcgcga
ctgctcggtcgcgccggcgaatcgctggcgacgctgctgtcgctgacgcccgaaggcgaa
gtcgccgcggccggtccgctcgacggccagaccgcggtgctcaccggcaccttggcggcc
atgagccgcgacgaggccaaggcgaagctggaagcgctcggcgcgaaggtcgccggcagc
gtgtcgaagaagaccagtttcgtcgtcgcgggtgaggcggccggttccaagctcgacaag
gcgacggaactgggcgtggacatctgggacgaagcgaagctgctggcgttcctcgcgcag
catggaggctga
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